Hb_000264_290

Information

Type -
Description -
Location Contig264: 261439-277595
Sequence    

Annotation

kegg
ID rcu:RCOM_0936370
description DNA-directed RNA polymerase II subunit, putative
nr
ID XP_012091599.1
description PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
swissprot
ID Q42877
description DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1
trembl
ID A0A0B0PUH6
description DNA-directed RNA polymerase OS=Gossypium arboreum GN=F383_04928 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase ii subunit rpb2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_290 0.0 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
2 Hb_000302_130 0.1202001146 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
3 Hb_007123_060 0.1469778427 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
4 Hb_012120_030 0.1544617499 - - -
5 Hb_008667_040 0.1750674674 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
6 Hb_188209_010 0.1753689582 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
7 Hb_149714_010 0.1803194403 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
8 Hb_100105_010 0.1835711326 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
9 Hb_000789_070 0.1878024673 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000152_230 0.1890369991 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
11 Hb_000363_330 0.1911143309 - - -
12 Hb_001545_050 0.195292746 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
13 Hb_007333_010 0.2058986604 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_004883_050 0.2061409054 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
15 Hb_006907_100 0.2074470497 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
16 Hb_000268_010 0.208888122 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001911_040 0.2101632827 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
18 Hb_014783_010 0.2126687361 - - cold-inducible RNA binding protein, putative [Ricinus communis]
19 Hb_000743_030 0.212807611 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
20 Hb_082407_010 0.2130438693 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000264_290 Hb_000264_290 Hb_000302_130 Hb_000302_130 Hb_000264_290--Hb_000302_130 Hb_007123_060 Hb_007123_060 Hb_000264_290--Hb_007123_060 Hb_012120_030 Hb_012120_030 Hb_000264_290--Hb_012120_030 Hb_008667_040 Hb_008667_040 Hb_000264_290--Hb_008667_040 Hb_188209_010 Hb_188209_010 Hb_000264_290--Hb_188209_010 Hb_149714_010 Hb_149714_010 Hb_000264_290--Hb_149714_010 Hb_006907_100 Hb_006907_100 Hb_000302_130--Hb_006907_100 Hb_100105_010 Hb_100105_010 Hb_000302_130--Hb_100105_010 Hb_000743_030 Hb_000743_030 Hb_000302_130--Hb_000743_030 Hb_000122_050 Hb_000122_050 Hb_000302_130--Hb_000122_050 Hb_000302_130--Hb_012120_030 Hb_004883_050 Hb_004883_050 Hb_007123_060--Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_007123_060--Hb_012760_130 Hb_001545_050 Hb_001545_050 Hb_007123_060--Hb_001545_050 Hb_000327_290 Hb_000327_290 Hb_007123_060--Hb_000327_290 Hb_184570_010 Hb_184570_010 Hb_007123_060--Hb_184570_010 Hb_007123_060--Hb_012120_030 Hb_000186_190 Hb_000186_190 Hb_012120_030--Hb_000186_190 Hb_000106_130 Hb_000106_130 Hb_012120_030--Hb_000106_130 Hb_064264_010 Hb_064264_010 Hb_012120_030--Hb_064264_010 Hb_002045_140 Hb_002045_140 Hb_008667_040--Hb_002045_140 Hb_008667_040--Hb_100105_010 Hb_133311_010 Hb_133311_010 Hb_008667_040--Hb_133311_010 Hb_010068_100 Hb_010068_100 Hb_008667_040--Hb_010068_100 Hb_008667_040--Hb_007123_060 Hb_000788_130 Hb_000788_130 Hb_188209_010--Hb_000788_130 Hb_000789_070 Hb_000789_070 Hb_188209_010--Hb_000789_070 Hb_000326_070 Hb_000326_070 Hb_188209_010--Hb_000326_070 Hb_003371_180 Hb_003371_180 Hb_188209_010--Hb_003371_180 Hb_000175_090 Hb_000175_090 Hb_188209_010--Hb_000175_090 Hb_013405_060 Hb_013405_060 Hb_188209_010--Hb_013405_060 Hb_000086_340 Hb_000086_340 Hb_149714_010--Hb_000086_340 Hb_000475_040 Hb_000475_040 Hb_149714_010--Hb_000475_040 Hb_149714_010--Hb_000122_050 Hb_000302_260 Hb_000302_260 Hb_149714_010--Hb_000302_260 Hb_030116_010 Hb_030116_010 Hb_149714_010--Hb_030116_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.445733 0.84106 0.586733 0.59643 0.340306 0.840448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.852743 0.849994 0.0642036 0.0754023 0

CAGE analysis