Hb_002045_140

Information

Type -
Description -
Location Contig2045: 96866-99452
Sequence    

Annotation

kegg
ID hir:HETIRDRAFT_439391
description hypothetical protein
nr
ID AAP80635.1
description histone acetyltransferase, partial [Triticum aestivum]
swissprot
ID Q9W0T1
description Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster GN=E(bx) PE=1 SV=2
trembl
ID A0A0A9KV31
description GCN5 OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0000123
description histone acetyltransferase gcn5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_140 0.0 - - histone acetyltransferase, partial [Triticum aestivum]
2 Hb_008667_040 0.1189494069 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
3 Hb_156526_010 0.1673113605 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
4 Hb_003073_050 0.1808610433 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
5 Hb_098546_010 0.203076666 - - thioredoxin-like family protein [Hevea brasiliensis]
6 Hb_082407_010 0.2036210829 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
7 Hb_136765_010 0.2115091541 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
8 Hb_005511_100 0.2115907223 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
9 Hb_133311_010 0.2145832512 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
10 Hb_000268_010 0.2166204102 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012135_010 0.2198647657 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_042404_010 0.2233762817 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
13 Hb_007333_010 0.2265445663 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_035746_010 0.2328340322 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
15 Hb_012532_030 0.2375974194 - - -
16 Hb_000264_290 0.2380778725 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
17 Hb_010068_100 0.2383575915 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
18 Hb_000025_060 0.2392954808 - - unknown [Populus trichocarpa]
19 Hb_007123_060 0.2393687939 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
20 Hb_004241_040 0.240237003 - - -

Gene co-expression network

sample Hb_002045_140 Hb_002045_140 Hb_008667_040 Hb_008667_040 Hb_002045_140--Hb_008667_040 Hb_156526_010 Hb_156526_010 Hb_002045_140--Hb_156526_010 Hb_003073_050 Hb_003073_050 Hb_002045_140--Hb_003073_050 Hb_098546_010 Hb_098546_010 Hb_002045_140--Hb_098546_010 Hb_082407_010 Hb_082407_010 Hb_002045_140--Hb_082407_010 Hb_136765_010 Hb_136765_010 Hb_002045_140--Hb_136765_010 Hb_000264_290 Hb_000264_290 Hb_008667_040--Hb_000264_290 Hb_100105_010 Hb_100105_010 Hb_008667_040--Hb_100105_010 Hb_133311_010 Hb_133311_010 Hb_008667_040--Hb_133311_010 Hb_010068_100 Hb_010068_100 Hb_008667_040--Hb_010068_100 Hb_007123_060 Hb_007123_060 Hb_008667_040--Hb_007123_060 Hb_003061_010 Hb_003061_010 Hb_156526_010--Hb_003061_010 Hb_126112_010 Hb_126112_010 Hb_156526_010--Hb_126112_010 Hb_156526_010--Hb_003073_050 Hb_005511_100 Hb_005511_100 Hb_156526_010--Hb_005511_100 Hb_003297_010 Hb_003297_010 Hb_156526_010--Hb_003297_010 Hb_006018_070 Hb_006018_070 Hb_003073_050--Hb_006018_070 Hb_003073_050--Hb_005511_100 Hb_171554_090 Hb_171554_090 Hb_003073_050--Hb_171554_090 Hb_004241_040 Hb_004241_040 Hb_003073_050--Hb_004241_040 Hb_000268_010 Hb_000268_010 Hb_098546_010--Hb_000268_010 Hb_098546_010--Hb_082407_010 Hb_098546_010--Hb_005511_100 Hb_006698_050 Hb_006698_050 Hb_098546_010--Hb_006698_050 Hb_007333_010 Hb_007333_010 Hb_098546_010--Hb_007333_010 Hb_082407_010--Hb_000268_010 Hb_000327_290 Hb_000327_290 Hb_082407_010--Hb_000327_290 Hb_013492_010 Hb_013492_010 Hb_082407_010--Hb_013492_010 Hb_003405_060 Hb_003405_060 Hb_082407_010--Hb_003405_060 Hb_182964_010 Hb_182964_010 Hb_082407_010--Hb_182964_010 Hb_082407_010--Hb_007123_060 Hb_000331_500 Hb_000331_500 Hb_136765_010--Hb_000331_500 Hb_068922_010 Hb_068922_010 Hb_136765_010--Hb_068922_010 Hb_002141_020 Hb_002141_020 Hb_136765_010--Hb_002141_020 Hb_012867_010 Hb_012867_010 Hb_136765_010--Hb_012867_010 Hb_136765_010--Hb_010068_100 Hb_136765_010--Hb_004241_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82092 1.17561 1.38479 1.31643 0.779279 4.71272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27388 4.3376 0 0 0

CAGE analysis