Hb_006018_070

Information

Type -
Description -
Location Contig6018: 156629-161896
Sequence    

Annotation

kegg
ID rcu:RCOM_1511340
description Cyclic nucleotide-gated ion channel, putative
nr
ID XP_002511425.1
description Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
swissprot
ID Q9SU64
description Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1
trembl
ID B9RB50
description Cyclic nucleotide-gated ion channel, putative OS=Ricinus communis GN=RCOM_1511340 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable cyclic nucleotide-gated ion channel 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006018_070 0.0 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
2 Hb_013691_020 0.2075188817 - - transcription initiation factor iie, alpha subunit, putative [Ricinus communis]
3 Hb_005511_100 0.2079712928 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
4 Hb_003073_050 0.2087792142 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
5 Hb_002151_080 0.210780283 - - hypothetical protein MIMGU_mgv1a000572mg [Erythranthe guttata]
6 Hb_003061_010 0.2114391015 - - hypothetical protein SORBIDRAFT_01g039870 [Sorghum bicolor]
7 Hb_000032_060 0.2142074533 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002737_070 0.2169372694 - - PREDICTED: phagocyte signaling-impaired protein [Jatropha curcas]
9 Hb_005839_050 0.2176814599 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
10 Hb_003297_010 0.2194259639 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
11 Hb_000230_040 0.2215380305 - - PREDICTED: protein MON2 homolog isoform X2 [Vitis vinifera]
12 Hb_000523_090 0.2259318232 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
13 Hb_033363_070 0.2281218266 - - PREDICTED: LOW QUALITY PROTEIN: methionine aminopeptidase 1B, chloroplastic, partial [Populus euphratica]
14 Hb_000062_430 0.22822739 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
15 Hb_156526_010 0.2289338196 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
16 Hb_000009_650 0.229537336 - - PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Jatropha curcas]
17 Hb_029921_040 0.2329315579 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000302_160 0.2343484314 - - PREDICTED: uncharacterized protein LOC105648403 [Jatropha curcas]
19 Hb_004127_010 0.2363250458 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Malus domestica]
20 Hb_008578_010 0.2371547701 - - 30S ribosomal protein S19, putative [Ricinus communis]

Gene co-expression network

sample Hb_006018_070 Hb_006018_070 Hb_013691_020 Hb_013691_020 Hb_006018_070--Hb_013691_020 Hb_005511_100 Hb_005511_100 Hb_006018_070--Hb_005511_100 Hb_003073_050 Hb_003073_050 Hb_006018_070--Hb_003073_050 Hb_002151_080 Hb_002151_080 Hb_006018_070--Hb_002151_080 Hb_003061_010 Hb_003061_010 Hb_006018_070--Hb_003061_010 Hb_000032_060 Hb_000032_060 Hb_006018_070--Hb_000032_060 Hb_002737_070 Hb_002737_070 Hb_013691_020--Hb_002737_070 Hb_000062_430 Hb_000062_430 Hb_013691_020--Hb_000062_430 Hb_000364_080 Hb_000364_080 Hb_013691_020--Hb_000364_080 Hb_002007_180 Hb_002007_180 Hb_013691_020--Hb_002007_180 Hb_000198_070 Hb_000198_070 Hb_013691_020--Hb_000198_070 Hb_005608_030 Hb_005608_030 Hb_013691_020--Hb_005608_030 Hb_007441_210 Hb_007441_210 Hb_005511_100--Hb_007441_210 Hb_009486_150 Hb_009486_150 Hb_005511_100--Hb_009486_150 Hb_007229_070 Hb_007229_070 Hb_005511_100--Hb_007229_070 Hb_000565_030 Hb_000565_030 Hb_005511_100--Hb_000565_030 Hb_007558_010 Hb_007558_010 Hb_005511_100--Hb_007558_010 Hb_017469_020 Hb_017469_020 Hb_005511_100--Hb_017469_020 Hb_002045_140 Hb_002045_140 Hb_003073_050--Hb_002045_140 Hb_156526_010 Hb_156526_010 Hb_003073_050--Hb_156526_010 Hb_003073_050--Hb_005511_100 Hb_171554_090 Hb_171554_090 Hb_003073_050--Hb_171554_090 Hb_004241_040 Hb_004241_040 Hb_003073_050--Hb_004241_040 Hb_000230_040 Hb_000230_040 Hb_002151_080--Hb_000230_040 Hb_002151_080--Hb_000032_060 Hb_000088_020 Hb_000088_020 Hb_002151_080--Hb_000088_020 Hb_000523_090 Hb_000523_090 Hb_002151_080--Hb_000523_090 Hb_000181_180 Hb_000181_180 Hb_002151_080--Hb_000181_180 Hb_002151_080--Hb_003061_010 Hb_003061_010--Hb_000230_040 Hb_126112_010 Hb_126112_010 Hb_003061_010--Hb_126112_010 Hb_000891_040 Hb_000891_040 Hb_003061_010--Hb_000891_040 Hb_003061_010--Hb_156526_010 Hb_005839_050 Hb_005839_050 Hb_003061_010--Hb_005839_050 Hb_006788_160 Hb_006788_160 Hb_000032_060--Hb_006788_160 Hb_000218_010 Hb_000218_010 Hb_000032_060--Hb_000218_010 Hb_010642_030 Hb_010642_030 Hb_000032_060--Hb_010642_030 Hb_003849_250 Hb_003849_250 Hb_000032_060--Hb_003849_250 Hb_000753_200 Hb_000753_200 Hb_000032_060--Hb_000753_200 Hb_000866_470 Hb_000866_470 Hb_000032_060--Hb_000866_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0442164 0.0218782 0.0272824 0.00624576 0.0248335 0.0827353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0200842 0.0632136 0 0.0125627 0.0334962

CAGE analysis