Hb_003073_050

Information

Type transcription factor
Description TF Family: B3
Location Contig3073: 42688-56029
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23920g
description hypothetical protein
nr
ID XP_012091546.1
description PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID A0A067LJW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32452: 46898-47491 , PASA_asmbl_32454: 50569-50816 , PASA_asmbl_32455: 51133-51479 , PASA_asmbl_32456: 51646-51798 , PASA_asmbl_32458: 52443-53409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003073_050 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
2 Hb_002045_140 0.1808610433 - - histone acetyltransferase, partial [Triticum aestivum]
3 Hb_156526_010 0.1871444718 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
4 Hb_006018_070 0.2087792142 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
5 Hb_005511_100 0.2090553696 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
6 Hb_171554_090 0.2191402678 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
7 Hb_004241_040 0.221174758 - - -
8 Hb_003849_080 0.2211862211 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_073367_010 0.2275482436 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
10 Hb_008667_040 0.2282428342 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
11 Hb_007229_070 0.2306245341 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
12 Hb_003061_010 0.2307192088 - - hypothetical protein SORBIDRAFT_01g039870 [Sorghum bicolor]
13 Hb_126112_010 0.2312402977 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
14 Hb_136765_010 0.2314465075 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
15 Hb_011161_070 0.231720677 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X1 [Populus euphratica]
16 Hb_009787_010 0.2416480026 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
17 Hb_000302_160 0.2430034836 - - PREDICTED: uncharacterized protein LOC105648403 [Jatropha curcas]
18 Hb_027472_030 0.2440868587 - - RNA helicase 36, partial [Manihot esculenta]
19 Hb_011828_050 0.2467787942 - - 40S ribosomal protein S23, putative [Ricinus communis]
20 Hb_082407_010 0.2479278219 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_003073_050 Hb_003073_050 Hb_002045_140 Hb_002045_140 Hb_003073_050--Hb_002045_140 Hb_156526_010 Hb_156526_010 Hb_003073_050--Hb_156526_010 Hb_006018_070 Hb_006018_070 Hb_003073_050--Hb_006018_070 Hb_005511_100 Hb_005511_100 Hb_003073_050--Hb_005511_100 Hb_171554_090 Hb_171554_090 Hb_003073_050--Hb_171554_090 Hb_004241_040 Hb_004241_040 Hb_003073_050--Hb_004241_040 Hb_008667_040 Hb_008667_040 Hb_002045_140--Hb_008667_040 Hb_002045_140--Hb_156526_010 Hb_098546_010 Hb_098546_010 Hb_002045_140--Hb_098546_010 Hb_082407_010 Hb_082407_010 Hb_002045_140--Hb_082407_010 Hb_136765_010 Hb_136765_010 Hb_002045_140--Hb_136765_010 Hb_003061_010 Hb_003061_010 Hb_156526_010--Hb_003061_010 Hb_126112_010 Hb_126112_010 Hb_156526_010--Hb_126112_010 Hb_156526_010--Hb_005511_100 Hb_003297_010 Hb_003297_010 Hb_156526_010--Hb_003297_010 Hb_013691_020 Hb_013691_020 Hb_006018_070--Hb_013691_020 Hb_006018_070--Hb_005511_100 Hb_002151_080 Hb_002151_080 Hb_006018_070--Hb_002151_080 Hb_006018_070--Hb_003061_010 Hb_000032_060 Hb_000032_060 Hb_006018_070--Hb_000032_060 Hb_007441_210 Hb_007441_210 Hb_005511_100--Hb_007441_210 Hb_009486_150 Hb_009486_150 Hb_005511_100--Hb_009486_150 Hb_007229_070 Hb_007229_070 Hb_005511_100--Hb_007229_070 Hb_000565_030 Hb_000565_030 Hb_005511_100--Hb_000565_030 Hb_007558_010 Hb_007558_010 Hb_005511_100--Hb_007558_010 Hb_017469_020 Hb_017469_020 Hb_005511_100--Hb_017469_020 Hb_004502_030 Hb_004502_030 Hb_171554_090--Hb_004502_030 Hb_044662_040 Hb_044662_040 Hb_171554_090--Hb_044662_040 Hb_025236_040 Hb_025236_040 Hb_171554_090--Hb_025236_040 Hb_001951_260 Hb_001951_260 Hb_171554_090--Hb_001951_260 Hb_000058_040 Hb_000058_040 Hb_171554_090--Hb_000058_040 Hb_003633_130 Hb_003633_130 Hb_171554_090--Hb_003633_130 Hb_032496_030 Hb_032496_030 Hb_004241_040--Hb_032496_030 Hb_073367_010 Hb_073367_010 Hb_004241_040--Hb_073367_010 Hb_000622_100 Hb_000622_100 Hb_004241_040--Hb_000622_100 Hb_004241_040--Hb_025236_040 Hb_005054_070 Hb_005054_070 Hb_004241_040--Hb_005054_070 Hb_004662_010 Hb_004662_010 Hb_004241_040--Hb_004662_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0902091 0.0316933 0.0491532 0.0355024 0.068519 0.226844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.064639 0.190743 0 0 0.0270781

CAGE analysis