Hb_002141_020

Information

Type -
Description -
Location Contig2141: 14510-15244
Sequence    

Annotation

kegg
ID rcu:RCOM_1443450
description zinc finger protein, putative
nr
ID XP_012067431.1
description PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
swissprot
ID O76924
description Protein ariadne-2 OS=Drosophila melanogaster GN=ari-2 PE=2 SV=1
trembl
ID A0A067LCT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26932 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase rnf217

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002141_020 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
2 Hb_000331_500 0.138158489 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_136765_010 0.156156616 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
4 Hb_004662_010 0.1654161152 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
5 Hb_012867_010 0.1698026535 - - Vacuolar protein sorting 45 [Theobroma cacao]
6 Hb_004109_060 0.1807706463 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
7 Hb_004241_040 0.1832708882 - - -
8 Hb_012305_040 0.1856084176 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
9 Hb_020730_010 0.191180315 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
10 Hb_089889_020 0.192277165 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
11 Hb_175612_010 0.1924915564 transcription factor TF Family: MBF1 orf [Ricinus communis]
12 Hb_002253_040 0.1939599419 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
13 Hb_017259_010 0.1956997351 - - -
14 Hb_058381_010 0.1973136292 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
15 Hb_000107_140 0.2048666631 - - -
16 Hb_000996_180 0.2048870691 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
17 Hb_042404_010 0.2082942969 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
18 Hb_073367_010 0.2088474756 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
19 Hb_009838_130 0.2100557203 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
20 Hb_171554_090 0.2104244885 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]

Gene co-expression network

sample Hb_002141_020 Hb_002141_020 Hb_000331_500 Hb_000331_500 Hb_002141_020--Hb_000331_500 Hb_136765_010 Hb_136765_010 Hb_002141_020--Hb_136765_010 Hb_004662_010 Hb_004662_010 Hb_002141_020--Hb_004662_010 Hb_012867_010 Hb_012867_010 Hb_002141_020--Hb_012867_010 Hb_004109_060 Hb_004109_060 Hb_002141_020--Hb_004109_060 Hb_004241_040 Hb_004241_040 Hb_002141_020--Hb_004241_040 Hb_000331_500--Hb_136765_010 Hb_000107_140 Hb_000107_140 Hb_000331_500--Hb_000107_140 Hb_003376_170 Hb_003376_170 Hb_000331_500--Hb_003376_170 Hb_000331_500--Hb_004662_010 Hb_042404_010 Hb_042404_010 Hb_000331_500--Hb_042404_010 Hb_068922_010 Hb_068922_010 Hb_136765_010--Hb_068922_010 Hb_136765_010--Hb_012867_010 Hb_010068_100 Hb_010068_100 Hb_136765_010--Hb_010068_100 Hb_136765_010--Hb_004241_040 Hb_181320_010 Hb_181320_010 Hb_004662_010--Hb_181320_010 Hb_004662_010--Hb_004241_040 Hb_144898_010 Hb_144898_010 Hb_004662_010--Hb_144898_010 Hb_012305_040 Hb_012305_040 Hb_004662_010--Hb_012305_040 Hb_175612_010 Hb_175612_010 Hb_004662_010--Hb_175612_010 Hb_005217_020 Hb_005217_020 Hb_004662_010--Hb_005217_020 Hb_089889_020 Hb_089889_020 Hb_012867_010--Hb_089889_020 Hb_107847_010 Hb_107847_010 Hb_012867_010--Hb_107847_010 Hb_012867_010--Hb_068922_010 Hb_125861_010 Hb_125861_010 Hb_012867_010--Hb_125861_010 Hb_002253_040 Hb_002253_040 Hb_004109_060--Hb_002253_040 Hb_017259_010 Hb_017259_010 Hb_004109_060--Hb_017259_010 Hb_009838_130 Hb_009838_130 Hb_004109_060--Hb_009838_130 Hb_001754_170 Hb_001754_170 Hb_004109_060--Hb_001754_170 Hb_000107_170 Hb_000107_170 Hb_004109_060--Hb_000107_170 Hb_001616_090 Hb_001616_090 Hb_004109_060--Hb_001616_090 Hb_032496_030 Hb_032496_030 Hb_004241_040--Hb_032496_030 Hb_073367_010 Hb_073367_010 Hb_004241_040--Hb_073367_010 Hb_000622_100 Hb_000622_100 Hb_004241_040--Hb_000622_100 Hb_025236_040 Hb_025236_040 Hb_004241_040--Hb_025236_040 Hb_005054_070 Hb_005054_070 Hb_004241_040--Hb_005054_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5098 8.16026 3.16405 8.07406 15.7193 24.7391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0603 10.4666 0.85345 0.120735 0

CAGE analysis