Hb_005217_020

Information

Type -
Description -
Location Contig5217: 27674-35898
Sequence    

Annotation

kegg
ID rcu:RCOM_1684240
description hypothetical protein
nr
ID XP_012087001.1
description PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
swissprot
ID A6QNR1
description Ribosomal RNA processing protein 36 homolog OS=Bos taurus GN=RRP36 PE=2 SV=1
trembl
ID A0A067JNE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20662 PE=4 SV=1
Gene Ontology
ID GO:0005730
description ribosomal rna processing protein 36 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46812: 27673-36072 , PASA_asmbl_46813: 27721-35841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005217_020 0.0 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
2 Hb_000264_060 0.1161865311 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
3 Hb_002837_070 0.1228818484 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
4 Hb_000270_450 0.1266926089 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
5 Hb_001523_010 0.1277467884 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
6 Hb_000172_530 0.1277713517 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
7 Hb_009615_110 0.1289540214 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
8 Hb_006478_070 0.1297038948 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
9 Hb_009801_010 0.1299314056 - - ATPase inhibitor, putative [Ricinus communis]
10 Hb_001956_120 0.1305507574 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001348_140 0.1306896333 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006173_020 0.1311590326 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
13 Hb_044662_040 0.1368686163 - - -
14 Hb_012807_120 0.1375782657 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_001635_220 0.1407364617 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
16 Hb_002955_010 0.1408783595 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
17 Hb_000185_090 0.1410305504 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
18 Hb_000320_440 0.1410680016 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
19 Hb_001140_080 0.1412474948 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
20 Hb_005016_150 0.1417912515 - - -

Gene co-expression network

sample Hb_005217_020 Hb_005217_020 Hb_000264_060 Hb_000264_060 Hb_005217_020--Hb_000264_060 Hb_002837_070 Hb_002837_070 Hb_005217_020--Hb_002837_070 Hb_000270_450 Hb_000270_450 Hb_005217_020--Hb_000270_450 Hb_001523_010 Hb_001523_010 Hb_005217_020--Hb_001523_010 Hb_000172_530 Hb_000172_530 Hb_005217_020--Hb_000172_530 Hb_009615_110 Hb_009615_110 Hb_005217_020--Hb_009615_110 Hb_001348_140 Hb_001348_140 Hb_000264_060--Hb_001348_140 Hb_010298_020 Hb_010298_020 Hb_000264_060--Hb_010298_020 Hb_000322_170 Hb_000322_170 Hb_000264_060--Hb_000322_170 Hb_074683_020 Hb_074683_020 Hb_000264_060--Hb_074683_020 Hb_000093_130 Hb_000093_130 Hb_000264_060--Hb_000093_130 Hb_000264_060--Hb_009615_110 Hb_061256_030 Hb_061256_030 Hb_002837_070--Hb_061256_030 Hb_113216_010 Hb_113216_010 Hb_002837_070--Hb_113216_010 Hb_010189_010 Hb_010189_010 Hb_002837_070--Hb_010189_010 Hb_174865_050 Hb_174865_050 Hb_002837_070--Hb_174865_050 Hb_000212_280 Hb_000212_280 Hb_002837_070--Hb_000212_280 Hb_000211_090 Hb_000211_090 Hb_002837_070--Hb_000211_090 Hb_001009_050 Hb_001009_050 Hb_000270_450--Hb_001009_050 Hb_001140_080 Hb_001140_080 Hb_000270_450--Hb_001140_080 Hb_025048_040 Hb_025048_040 Hb_000270_450--Hb_025048_040 Hb_000270_450--Hb_009615_110 Hb_005016_030 Hb_005016_030 Hb_000270_450--Hb_005016_030 Hb_000320_440 Hb_000320_440 Hb_000270_450--Hb_000320_440 Hb_000466_060 Hb_000466_060 Hb_001523_010--Hb_000466_060 Hb_001523_010--Hb_000172_530 Hb_001523_010--Hb_113216_010 Hb_001523_010--Hb_005016_030 Hb_001523_010--Hb_000270_450 Hb_001825_010 Hb_001825_010 Hb_001523_010--Hb_001825_010 Hb_000172_530--Hb_000320_440 Hb_001846_080 Hb_001846_080 Hb_000172_530--Hb_001846_080 Hb_006478_070 Hb_006478_070 Hb_000172_530--Hb_006478_070 Hb_000172_530--Hb_000466_060 Hb_000172_530--Hb_005016_030 Hb_000318_140 Hb_000318_140 Hb_009615_110--Hb_000318_140 Hb_009615_110--Hb_000320_440 Hb_002955_010 Hb_002955_010 Hb_009615_110--Hb_002955_010 Hb_009615_110--Hb_001009_050 Hb_006173_020 Hb_006173_020 Hb_009615_110--Hb_006173_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
354.526 59.0472 26.3068 23.9515 304.178 405.831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
165.72 106.129 16.7693 25.1958 14.1257

CAGE analysis