Hb_010298_020

Information

Type -
Description -
Location Contig10298: 33885-37886
Sequence    

Annotation

kegg
ID csv:101232337
description uncharacterized LOC101232337
nr
ID XP_010654778.1
description PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
swissprot
ID Q5PPV5
description Zinc finger C2HC domain-containing protein 1A OS=Xenopus laevis GN=zc2hc1a PE=2 SV=1
trembl
ID A5BYD2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01165: 6207-34142 , PASA_asmbl_01166: 6207-34142 , PASA_asmbl_01168: 34459-37980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010298_020 0.0 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
2 Hb_001616_090 0.0842630901 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
3 Hb_025048_030 0.0844796905 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
4 Hb_001663_110 0.0890305102 - - RNA binding protein, putative [Ricinus communis]
5 Hb_005701_040 0.0913919915 - - cellular nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000116_110 0.0924167071 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
7 Hb_000264_060 0.0962412325 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
8 Hb_004374_150 0.097656857 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
9 Hb_018663_020 0.0990550759 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
10 Hb_000318_140 0.0995542509 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
11 Hb_012305_070 0.1006327743 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005333_020 0.1013258671 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
13 Hb_009615_110 0.1019320339 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
14 Hb_000732_020 0.1035193196 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
15 Hb_007643_050 0.1040115263 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000175_390 0.1048417955 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
17 Hb_005914_230 0.1052751783 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
18 Hb_005237_060 0.105732784 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
19 Hb_001009_050 0.1057687498 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
20 Hb_001969_040 0.1073828534 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_010298_020 Hb_010298_020 Hb_001616_090 Hb_001616_090 Hb_010298_020--Hb_001616_090 Hb_025048_030 Hb_025048_030 Hb_010298_020--Hb_025048_030 Hb_001663_110 Hb_001663_110 Hb_010298_020--Hb_001663_110 Hb_005701_040 Hb_005701_040 Hb_010298_020--Hb_005701_040 Hb_000116_110 Hb_000116_110 Hb_010298_020--Hb_000116_110 Hb_000264_060 Hb_000264_060 Hb_010298_020--Hb_000264_060 Hb_000186_280 Hb_000186_280 Hb_001616_090--Hb_000186_280 Hb_009411_020 Hb_009411_020 Hb_001616_090--Hb_009411_020 Hb_031091_010 Hb_031091_010 Hb_001616_090--Hb_031091_010 Hb_007643_050 Hb_007643_050 Hb_001616_090--Hb_007643_050 Hb_000684_420 Hb_000684_420 Hb_001616_090--Hb_000684_420 Hb_173178_020 Hb_173178_020 Hb_001616_090--Hb_173178_020 Hb_001195_100 Hb_001195_100 Hb_025048_030--Hb_001195_100 Hb_005271_070 Hb_005271_070 Hb_025048_030--Hb_005271_070 Hb_001348_140 Hb_001348_140 Hb_025048_030--Hb_001348_140 Hb_006588_090 Hb_006588_090 Hb_025048_030--Hb_006588_090 Hb_004232_010 Hb_004232_010 Hb_025048_030--Hb_004232_010 Hb_000976_270 Hb_000976_270 Hb_001663_110--Hb_000976_270 Hb_004447_030 Hb_004447_030 Hb_001663_110--Hb_004447_030 Hb_000205_120 Hb_000205_120 Hb_001663_110--Hb_000205_120 Hb_000236_280 Hb_000236_280 Hb_001663_110--Hb_000236_280 Hb_012305_070 Hb_012305_070 Hb_001663_110--Hb_012305_070 Hb_005237_060 Hb_005237_060 Hb_001663_110--Hb_005237_060 Hb_001504_150 Hb_001504_150 Hb_005701_040--Hb_001504_150 Hb_004678_020 Hb_004678_020 Hb_005701_040--Hb_004678_020 Hb_005701_040--Hb_012305_070 Hb_005914_230 Hb_005914_230 Hb_005701_040--Hb_005914_230 Hb_023001_020 Hb_023001_020 Hb_005701_040--Hb_023001_020 Hb_003656_160 Hb_003656_160 Hb_005701_040--Hb_003656_160 Hb_000116_110--Hb_007643_050 Hb_000116_110--Hb_012305_070 Hb_015941_030 Hb_015941_030 Hb_000116_110--Hb_015941_030 Hb_002475_160 Hb_002475_160 Hb_000116_110--Hb_002475_160 Hb_000236_370 Hb_000236_370 Hb_000116_110--Hb_000236_370 Hb_000265_150 Hb_000265_150 Hb_000116_110--Hb_000265_150 Hb_000264_060--Hb_001348_140 Hb_000322_170 Hb_000322_170 Hb_000264_060--Hb_000322_170 Hb_074683_020 Hb_074683_020 Hb_000264_060--Hb_074683_020 Hb_000093_130 Hb_000093_130 Hb_000264_060--Hb_000093_130 Hb_009615_110 Hb_009615_110 Hb_000264_060--Hb_009615_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
114.273 52.6809 31.1949 12.2173 105.047 142.262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.0528 47.0504 27.646 18.0985 7.57535

CAGE analysis