Hb_000268_010

Information

Type -
Description -
Location Contig268: 16241-16624
Sequence    

Annotation

kegg
ID rcu:RCOM_0655970
description hypothetical protein
nr
ID XP_002533441.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5C2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655970 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ribosomal l18p l5e family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27896: 16017-16515 , PASA_asmbl_27897: 16867-17328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000268_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_014783_010 0.1090451395 - - cold-inducible RNA binding protein, putative [Ricinus communis]
3 Hb_003943_130 0.1135678286 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
4 Hb_082407_010 0.1149341093 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
5 Hb_004807_060 0.130989756 - - -
6 Hb_002742_050 0.1331019377 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]
7 Hb_002289_120 0.1347995741 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
8 Hb_005653_080 0.1382760141 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
9 Hb_000010_210 0.1383997998 - - PREDICTED: centromere protein X [Jatropha curcas]
10 Hb_000094_020 0.1393349879 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
11 Hb_002316_060 0.1433577021 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
12 Hb_086703_010 0.1436477281 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
13 Hb_002983_010 0.1464802003 - - F-box family protein [Populus trichocarpa]
14 Hb_000101_270 0.1483481608 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
15 Hb_064264_010 0.1485666093 - - hypothetical protein [Zea mays]
16 Hb_000565_030 0.1487699303 - - PREDICTED: 40S ribosomal protein S26-3-like [Jatropha curcas]
17 Hb_000975_250 0.1500695981 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
18 Hb_007432_080 0.1517525189 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
19 Hb_001369_660 0.1521846733 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
20 Hb_001946_210 0.1532887443 - - ribosomal protein l7ae, putative [Ricinus communis]

Gene co-expression network

sample Hb_000268_010 Hb_000268_010 Hb_014783_010 Hb_014783_010 Hb_000268_010--Hb_014783_010 Hb_003943_130 Hb_003943_130 Hb_000268_010--Hb_003943_130 Hb_082407_010 Hb_082407_010 Hb_000268_010--Hb_082407_010 Hb_004807_060 Hb_004807_060 Hb_000268_010--Hb_004807_060 Hb_002742_050 Hb_002742_050 Hb_000268_010--Hb_002742_050 Hb_002289_120 Hb_002289_120 Hb_000268_010--Hb_002289_120 Hb_000186_190 Hb_000186_190 Hb_014783_010--Hb_000186_190 Hb_014783_010--Hb_003943_130 Hb_014783_010--Hb_002289_120 Hb_001357_100 Hb_001357_100 Hb_014783_010--Hb_001357_100 Hb_000101_270 Hb_000101_270 Hb_014783_010--Hb_000101_270 Hb_001369_640 Hb_001369_640 Hb_003943_130--Hb_001369_640 Hb_003943_130--Hb_002289_120 Hb_000152_420 Hb_000152_420 Hb_003943_130--Hb_000152_420 Hb_002316_060 Hb_002316_060 Hb_003943_130--Hb_002316_060 Hb_001538_090 Hb_001538_090 Hb_003943_130--Hb_001538_090 Hb_006909_030 Hb_006909_030 Hb_003943_130--Hb_006909_030 Hb_000327_290 Hb_000327_290 Hb_082407_010--Hb_000327_290 Hb_013492_010 Hb_013492_010 Hb_082407_010--Hb_013492_010 Hb_003405_060 Hb_003405_060 Hb_082407_010--Hb_003405_060 Hb_182964_010 Hb_182964_010 Hb_082407_010--Hb_182964_010 Hb_007123_060 Hb_007123_060 Hb_082407_010--Hb_007123_060 Hb_001057_050 Hb_001057_050 Hb_004807_060--Hb_001057_050 Hb_000193_350 Hb_000193_350 Hb_004807_060--Hb_000193_350 Hb_003058_220 Hb_003058_220 Hb_004807_060--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_004807_060--Hb_005224_050 Hb_014834_140 Hb_014834_140 Hb_004807_060--Hb_014834_140 Hb_000094_020 Hb_000094_020 Hb_004807_060--Hb_000094_020 Hb_004052_020 Hb_004052_020 Hb_002742_050--Hb_004052_020 Hb_001214_140 Hb_001214_140 Hb_002742_050--Hb_001214_140 Hb_000057_070 Hb_000057_070 Hb_002742_050--Hb_000057_070 Hb_009486_150 Hb_009486_150 Hb_002742_050--Hb_009486_150 Hb_000565_030 Hb_000565_030 Hb_002742_050--Hb_000565_030 Hb_005496_030 Hb_005496_030 Hb_002742_050--Hb_005496_030 Hb_001814_070 Hb_001814_070 Hb_002289_120--Hb_001814_070 Hb_002289_120--Hb_000152_420 Hb_002289_120--Hb_001369_640 Hb_128048_010 Hb_128048_010 Hb_002289_120--Hb_128048_010 Hb_019249_010 Hb_019249_010 Hb_002289_120--Hb_019249_010 Hb_003878_010 Hb_003878_010 Hb_002289_120--Hb_003878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7369 16.2757 15.3528 29.1731 15.2936 48.452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.9827 76.118 10.1749 5.93461 1.76222

CAGE analysis