Hb_003929_100

Information

Type transcription factor
Description TF Family: M-type
Location Contig3929: 68060-68599
Sequence    

Annotation

kegg
ID pop:POPTR_0004s00400g
description hypothetical protein
nr
ID XP_011047019.1
description PREDICTED: agamous-like MADS-box protein AGL61 [Populus euphratica]
swissprot
ID Q9FKK2
description Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1
trembl
ID U5GJQ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s00400g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_100 0.0 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Populus euphratica]
2 Hb_068194_010 0.1709187309 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
3 Hb_000005_110 0.1816309408 - - histone H2B1 [Hevea brasiliensis]
4 Hb_000331_350 0.1837995752 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
5 Hb_000176_150 0.1842545064 - - PREDICTED: lactation elevated protein 1 isoform X2 [Jatropha curcas]
6 Hb_001250_070 0.1858595813 - - ATP-citrate synthase, putative [Ricinus communis]
7 Hb_003126_130 0.1882194024 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
8 Hb_000684_120 0.1887062996 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
9 Hb_000723_340 0.1924041572 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
10 Hb_001221_030 0.1925273636 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
11 Hb_000035_240 0.1931359351 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001301_340 0.1976886619 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
13 Hb_000364_170 0.1977198716 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
14 Hb_000676_020 0.1981609612 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
15 Hb_001488_030 0.1985298865 - - biotin carboxyl carrier protein [Vernicia fordii]
16 Hb_003411_090 0.198812811 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
17 Hb_000740_040 0.198978074 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
18 Hb_000317_260 0.20096664 - - unknown [Populus trichocarpa]
19 Hb_188281_030 0.2013764116 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
20 Hb_088500_010 0.2030588921 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]

Gene co-expression network

sample Hb_003929_100 Hb_003929_100 Hb_068194_010 Hb_068194_010 Hb_003929_100--Hb_068194_010 Hb_000005_110 Hb_000005_110 Hb_003929_100--Hb_000005_110 Hb_000331_350 Hb_000331_350 Hb_003929_100--Hb_000331_350 Hb_000176_150 Hb_000176_150 Hb_003929_100--Hb_000176_150 Hb_001250_070 Hb_001250_070 Hb_003929_100--Hb_001250_070 Hb_003126_130 Hb_003126_130 Hb_003929_100--Hb_003126_130 Hb_000676_020 Hb_000676_020 Hb_068194_010--Hb_000676_020 Hb_000820_140 Hb_000820_140 Hb_068194_010--Hb_000820_140 Hb_006445_020 Hb_006445_020 Hb_068194_010--Hb_006445_020 Hb_009851_010 Hb_009851_010 Hb_068194_010--Hb_009851_010 Hb_001102_050 Hb_001102_050 Hb_068194_010--Hb_001102_050 Hb_001322_230 Hb_001322_230 Hb_068194_010--Hb_001322_230 Hb_000345_460 Hb_000345_460 Hb_000005_110--Hb_000345_460 Hb_000364_170 Hb_000364_170 Hb_000005_110--Hb_000364_170 Hb_030627_070 Hb_030627_070 Hb_000005_110--Hb_030627_070 Hb_000740_040 Hb_000740_040 Hb_000005_110--Hb_000740_040 Hb_188281_030 Hb_188281_030 Hb_000005_110--Hb_188281_030 Hb_001221_030 Hb_001221_030 Hb_000005_110--Hb_001221_030 Hb_010172_110 Hb_010172_110 Hb_000331_350--Hb_010172_110 Hb_000331_350--Hb_188281_030 Hb_000310_120 Hb_000310_120 Hb_000331_350--Hb_000310_120 Hb_002007_320 Hb_002007_320 Hb_000331_350--Hb_002007_320 Hb_000057_110 Hb_000057_110 Hb_000331_350--Hb_000057_110 Hb_000406_030 Hb_000406_030 Hb_000331_350--Hb_000406_030 Hb_000018_140 Hb_000018_140 Hb_000176_150--Hb_000018_140 Hb_086122_010 Hb_086122_010 Hb_000176_150--Hb_086122_010 Hb_088500_010 Hb_088500_010 Hb_000176_150--Hb_088500_010 Hb_000189_130 Hb_000189_130 Hb_000176_150--Hb_000189_130 Hb_000176_150--Hb_001322_230 Hb_003935_060 Hb_003935_060 Hb_001250_070--Hb_003935_060 Hb_000721_030 Hb_000721_030 Hb_001250_070--Hb_000721_030 Hb_000365_130 Hb_000365_130 Hb_001250_070--Hb_000365_130 Hb_003411_090 Hb_003411_090 Hb_001250_070--Hb_003411_090 Hb_001504_030 Hb_001504_030 Hb_001250_070--Hb_001504_030 Hb_001022_030 Hb_001022_030 Hb_001250_070--Hb_001022_030 Hb_007894_050 Hb_007894_050 Hb_003126_130--Hb_007894_050 Hb_001377_450 Hb_001377_450 Hb_003126_130--Hb_001377_450 Hb_001073_080 Hb_001073_080 Hb_003126_130--Hb_001073_080 Hb_002909_020 Hb_002909_020 Hb_003126_130--Hb_002909_020 Hb_001019_150 Hb_001019_150 Hb_003126_130--Hb_001019_150 Hb_000796_010 Hb_000796_010 Hb_003126_130--Hb_000796_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.411945 0.104806 3.08043 2.03218 0.484926 0.0850408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89779 1.21157 0.320465 1.0778 1.59335

CAGE analysis