Hb_000176_150

Information

Type -
Description -
Location Contig176: 387171-400047
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10990g
description POPTRDRAFT_1106960; hypothetical protein
nr
ID XP_012071592.1
description PREDICTED: lactation elevated protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q8WV93
description Lactation elevated protein 1 OS=Homo sapiens GN=LACE1 PE=1 SV=2
trembl
ID A0A067L2P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04098 PE=4 SV=1
Gene Ontology
ID GO:0005524
description lactation elevated protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16878: 394159-395147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_150 0.0 - - PREDICTED: lactation elevated protein 1 isoform X2 [Jatropha curcas]
2 Hb_000018_140 0.1338414843 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
3 Hb_086122_010 0.1758784372 - - PREDICTED: immunoglobulin-like domain-containing receptor 1 [Jatropha curcas]
4 Hb_003929_100 0.1842545064 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Populus euphratica]
5 Hb_088500_010 0.1888681808 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
6 Hb_000189_130 0.1906274311 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
7 Hb_001322_230 0.2022914714 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
8 Hb_010578_030 0.2054975943 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
9 Hb_001103_060 0.2069889467 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
10 Hb_002175_020 0.2095724069 - - PREDICTED: uncharacterized protein LOC105642125 isoform X2 [Jatropha curcas]
11 Hb_001842_020 0.2105508831 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
12 Hb_004348_040 0.2124922939 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
13 Hb_001105_040 0.2125290242 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004502_010 0.2132153435 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
15 Hb_012506_070 0.2138100415 - - hypothetical protein POPTR_0004s20060g [Populus trichocarpa]
16 Hb_000574_470 0.2168150977 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_005656_170 0.2186094119 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
18 Hb_000029_400 0.2188209336 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
19 Hb_010318_010 0.2196655268 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
20 Hb_000820_140 0.2209266966 - - histone H4 [Zea mays]

Gene co-expression network

sample Hb_000176_150 Hb_000176_150 Hb_000018_140 Hb_000018_140 Hb_000176_150--Hb_000018_140 Hb_086122_010 Hb_086122_010 Hb_000176_150--Hb_086122_010 Hb_003929_100 Hb_003929_100 Hb_000176_150--Hb_003929_100 Hb_088500_010 Hb_088500_010 Hb_000176_150--Hb_088500_010 Hb_000189_130 Hb_000189_130 Hb_000176_150--Hb_000189_130 Hb_001322_230 Hb_001322_230 Hb_000176_150--Hb_001322_230 Hb_000018_140--Hb_086122_010 Hb_000270_280 Hb_000270_280 Hb_000018_140--Hb_000270_280 Hb_004648_030 Hb_004648_030 Hb_000018_140--Hb_004648_030 Hb_001842_020 Hb_001842_020 Hb_000018_140--Hb_001842_020 Hb_056196_010 Hb_056196_010 Hb_000018_140--Hb_056196_010 Hb_000402_020 Hb_000402_020 Hb_086122_010--Hb_000402_020 Hb_010578_030 Hb_010578_030 Hb_086122_010--Hb_010578_030 Hb_086122_010--Hb_000189_130 Hb_005618_080 Hb_005618_080 Hb_086122_010--Hb_005618_080 Hb_000212_250 Hb_000212_250 Hb_086122_010--Hb_000212_250 Hb_004117_040 Hb_004117_040 Hb_086122_010--Hb_004117_040 Hb_068194_010 Hb_068194_010 Hb_003929_100--Hb_068194_010 Hb_000005_110 Hb_000005_110 Hb_003929_100--Hb_000005_110 Hb_000331_350 Hb_000331_350 Hb_003929_100--Hb_000331_350 Hb_001250_070 Hb_001250_070 Hb_003929_100--Hb_001250_070 Hb_003126_130 Hb_003126_130 Hb_003929_100--Hb_003126_130 Hb_000059_270 Hb_000059_270 Hb_088500_010--Hb_000059_270 Hb_009178_070 Hb_009178_070 Hb_088500_010--Hb_009178_070 Hb_002053_010 Hb_002053_010 Hb_088500_010--Hb_002053_010 Hb_001124_190 Hb_001124_190 Hb_088500_010--Hb_001124_190 Hb_001124_180 Hb_001124_180 Hb_088500_010--Hb_001124_180 Hb_000110_230 Hb_000110_230 Hb_088500_010--Hb_000110_230 Hb_000307_070 Hb_000307_070 Hb_000189_130--Hb_000307_070 Hb_001009_140 Hb_001009_140 Hb_000189_130--Hb_001009_140 Hb_000331_420 Hb_000331_420 Hb_000189_130--Hb_000331_420 Hb_000589_170 Hb_000589_170 Hb_000189_130--Hb_000589_170 Hb_001587_040 Hb_001587_040 Hb_000189_130--Hb_001587_040 Hb_000189_130--Hb_001322_230 Hb_000820_140 Hb_000820_140 Hb_001322_230--Hb_000820_140 Hb_001322_230--Hb_002053_010 Hb_001711_120 Hb_001711_120 Hb_001322_230--Hb_001711_120 Hb_003602_060 Hb_003602_060 Hb_001322_230--Hb_003602_060 Hb_000560_040 Hb_000560_040 Hb_001322_230--Hb_000560_040 Hb_001863_070 Hb_001863_070 Hb_001322_230--Hb_001863_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.379224 0.996368 5.45997 2.07337 1.1436 0.182317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14943 1.96598 0.0313818 1.69474 4.09256

CAGE analysis