Hb_010578_030

Information

Type -
Description -
Location Contig10578: 32709-36634
Sequence    

Annotation

kegg
ID rcu:RCOM_0484630
description hypothetical protein
nr
ID XP_012089257.1
description PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
swissprot
ID Q9XH46
description Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum GN=TATA PE=1 SV=1
trembl
ID A0A067JIF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23495 PE=3 SV=1
Gene Ontology
ID GO:0009941
description sec-independent protein translocase protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01902: 32900-36612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010578_030 0.0 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
2 Hb_086122_010 0.1427208554 - - PREDICTED: immunoglobulin-like domain-containing receptor 1 [Jatropha curcas]
3 Hb_031139_010 0.14938589 - - PREDICTED: uncharacterized protein LOC105632403 isoform X1 [Jatropha curcas]
4 Hb_000358_040 0.1538112991 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
5 Hb_000112_060 0.1559410767 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
6 Hb_000402_020 0.1580254868 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000059_270 0.1614941189 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
8 Hb_005618_080 0.1621400619 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
9 Hb_004117_040 0.1632866548 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
10 Hb_088500_010 0.1639730069 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
11 Hb_005116_100 0.1644705793 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
12 Hb_001649_030 0.1678371381 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
13 Hb_003029_020 0.1683801653 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
14 Hb_002232_380 0.1685864258 - - malate dehydrogenase, putative [Ricinus communis]
15 Hb_003376_390 0.1697300765 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
16 Hb_001269_500 0.1717660844 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
17 Hb_000574_470 0.1742423722 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_172632_060 0.1755716878 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
19 Hb_006829_080 0.1760572296 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
20 Hb_027445_100 0.1764046702 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]

Gene co-expression network

sample Hb_010578_030 Hb_010578_030 Hb_086122_010 Hb_086122_010 Hb_010578_030--Hb_086122_010 Hb_031139_010 Hb_031139_010 Hb_010578_030--Hb_031139_010 Hb_000358_040 Hb_000358_040 Hb_010578_030--Hb_000358_040 Hb_000112_060 Hb_000112_060 Hb_010578_030--Hb_000112_060 Hb_000402_020 Hb_000402_020 Hb_010578_030--Hb_000402_020 Hb_000059_270 Hb_000059_270 Hb_010578_030--Hb_000059_270 Hb_086122_010--Hb_000402_020 Hb_000189_130 Hb_000189_130 Hb_086122_010--Hb_000189_130 Hb_005618_080 Hb_005618_080 Hb_086122_010--Hb_005618_080 Hb_000212_250 Hb_000212_250 Hb_086122_010--Hb_000212_250 Hb_004117_040 Hb_004117_040 Hb_086122_010--Hb_004117_040 Hb_002232_380 Hb_002232_380 Hb_031139_010--Hb_002232_380 Hb_002005_040 Hb_002005_040 Hb_031139_010--Hb_002005_040 Hb_004055_160 Hb_004055_160 Hb_031139_010--Hb_004055_160 Hb_006829_080 Hb_006829_080 Hb_031139_010--Hb_006829_080 Hb_009687_020 Hb_009687_020 Hb_031139_010--Hb_009687_020 Hb_000803_240 Hb_000803_240 Hb_031139_010--Hb_000803_240 Hb_002928_030 Hb_002928_030 Hb_000358_040--Hb_002928_030 Hb_004629_030 Hb_004629_030 Hb_000358_040--Hb_004629_030 Hb_001649_030 Hb_001649_030 Hb_000358_040--Hb_001649_030 Hb_000260_710 Hb_000260_710 Hb_000358_040--Hb_000260_710 Hb_000482_050 Hb_000482_050 Hb_000358_040--Hb_000482_050 Hb_003376_390 Hb_003376_390 Hb_000358_040--Hb_003376_390 Hb_010128_020 Hb_010128_020 Hb_000112_060--Hb_010128_020 Hb_036790_120 Hb_036790_120 Hb_000112_060--Hb_036790_120 Hb_007426_170 Hb_007426_170 Hb_000112_060--Hb_007426_170 Hb_005276_010 Hb_005276_010 Hb_000112_060--Hb_005276_010 Hb_000152_480 Hb_000152_480 Hb_000112_060--Hb_000152_480 Hb_003029_020 Hb_003029_020 Hb_000112_060--Hb_003029_020 Hb_000402_020--Hb_005618_080 Hb_005116_100 Hb_005116_100 Hb_000402_020--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_000402_020--Hb_001959_060 Hb_003752_090 Hb_003752_090 Hb_000402_020--Hb_003752_090 Hb_000402_020--Hb_006829_080 Hb_000056_310 Hb_000056_310 Hb_000402_020--Hb_000056_310 Hb_006198_130 Hb_006198_130 Hb_000059_270--Hb_006198_130 Hb_000816_200 Hb_000816_200 Hb_000059_270--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_000059_270--Hb_016461_030 Hb_003171_030 Hb_003171_030 Hb_000059_270--Hb_003171_030 Hb_000059_270--Hb_009687_020 Hb_000345_370 Hb_000345_370 Hb_000059_270--Hb_000345_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8111 13.3673 50.9039 17.8924 5.1125 9.79379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4502 15.8215 0.60532 9.56409 72.5405

CAGE analysis