Hb_031139_010

Information

Type -
Description -
Location Contig31139: 9777-20907
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18370g
description hypothetical protein
nr
ID XP_012070167.1
description PREDICTED: uncharacterized protein LOC105632403 isoform X1 [Jatropha curcas]
swissprot
ID O32107
description Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1
trembl
ID A0A067KXY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04233 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32950: 9857-20760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031139_010 0.0 - - PREDICTED: uncharacterized protein LOC105632403 isoform X1 [Jatropha curcas]
2 Hb_002232_380 0.1094925816 - - malate dehydrogenase, putative [Ricinus communis]
3 Hb_002005_040 0.1160325182 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_004055_160 0.1164649275 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
5 Hb_006829_080 0.1194619383 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
6 Hb_009687_020 0.1197914239 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
7 Hb_000803_240 0.121359634 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
8 Hb_005618_080 0.1229806026 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
9 Hb_001723_030 0.1249573372 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
10 Hb_005116_100 0.1259110344 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
11 Hb_002217_140 0.1316025696 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
12 Hb_014361_110 0.1353939165 - - RNA binding protein, putative [Ricinus communis]
13 Hb_003171_030 0.1395656736 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
14 Hb_001269_500 0.1404966621 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
15 Hb_005618_150 0.1405034051 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
16 Hb_003494_030 0.1428273926 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
17 Hb_001649_030 0.1431783071 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
18 Hb_006198_130 0.1432638394 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
19 Hb_000112_060 0.1439529524 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
20 Hb_126917_010 0.1441927581 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]

Gene co-expression network

sample Hb_031139_010 Hb_031139_010 Hb_002232_380 Hb_002232_380 Hb_031139_010--Hb_002232_380 Hb_002005_040 Hb_002005_040 Hb_031139_010--Hb_002005_040 Hb_004055_160 Hb_004055_160 Hb_031139_010--Hb_004055_160 Hb_006829_080 Hb_006829_080 Hb_031139_010--Hb_006829_080 Hb_009687_020 Hb_009687_020 Hb_031139_010--Hb_009687_020 Hb_000803_240 Hb_000803_240 Hb_031139_010--Hb_000803_240 Hb_002232_380--Hb_006829_080 Hb_000802_050 Hb_000802_050 Hb_002232_380--Hb_000802_050 Hb_000703_070 Hb_000703_070 Hb_002232_380--Hb_000703_070 Hb_027298_020 Hb_027298_020 Hb_002232_380--Hb_027298_020 Hb_005618_080 Hb_005618_080 Hb_002232_380--Hb_005618_080 Hb_003494_030 Hb_003494_030 Hb_002232_380--Hb_003494_030 Hb_002005_040--Hb_004055_160 Hb_001348_090 Hb_001348_090 Hb_002005_040--Hb_001348_090 Hb_005116_100 Hb_005116_100 Hb_002005_040--Hb_005116_100 Hb_002044_160 Hb_002044_160 Hb_002005_040--Hb_002044_160 Hb_000684_430 Hb_000684_430 Hb_002005_040--Hb_000684_430 Hb_001269_500 Hb_001269_500 Hb_002005_040--Hb_001269_500 Hb_004055_160--Hb_000684_430 Hb_004055_160--Hb_009687_020 Hb_004055_160--Hb_006829_080 Hb_004055_160--Hb_005116_100 Hb_004055_160--Hb_001348_090 Hb_001959_060 Hb_001959_060 Hb_006829_080--Hb_001959_060 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_006829_080--Hb_000684_430 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_003171_030 Hb_003171_030 Hb_009687_020--Hb_003171_030 Hb_006198_130 Hb_006198_130 Hb_009687_020--Hb_006198_130 Hb_158092_100 Hb_158092_100 Hb_009687_020--Hb_158092_100 Hb_009687_020--Hb_001269_500 Hb_009687_020--Hb_000473_050 Hb_001723_030 Hb_001723_030 Hb_000803_240--Hb_001723_030 Hb_010984_010 Hb_010984_010 Hb_000803_240--Hb_010984_010 Hb_014361_110 Hb_014361_110 Hb_000803_240--Hb_014361_110 Hb_002740_190 Hb_002740_190 Hb_000803_240--Hb_002740_190 Hb_002217_140 Hb_002217_140 Hb_000803_240--Hb_002217_140 Hb_166127_030 Hb_166127_030 Hb_000803_240--Hb_166127_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76001 2.41497 14.6958 5.94967 3.04616 4.94023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.48932 3.14257 0.421604 3.71262 26.2644

CAGE analysis