Hb_000018_140

Information

Type -
Description -
Location Contig18: 173221-175735
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00410g
description POPTRDRAFT_668906; hypothetical protein
nr
ID XP_012077407.1
description PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IKK1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00410g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17426: 173553-174003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000018_140 0.0 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
2 Hb_000176_150 0.1338414843 - - PREDICTED: lactation elevated protein 1 isoform X2 [Jatropha curcas]
3 Hb_086122_010 0.1559348989 - - PREDICTED: immunoglobulin-like domain-containing receptor 1 [Jatropha curcas]
4 Hb_000270_280 0.1735242216 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
5 Hb_004648_030 0.1742383671 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
6 Hb_001842_020 0.1775649872 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
7 Hb_056196_010 0.1833239803 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
8 Hb_000300_100 0.1836997763 - - NADH-cytochrome b5 reductase 1 [Morus notabilis]
9 Hb_007904_040 0.186067501 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
10 Hb_000032_140 0.1861778534 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000457_250 0.1875405642 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
12 Hb_000307_070 0.1910300233 - - protein kinase, putative [Ricinus communis]
13 Hb_000310_060 0.1928259403 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
14 Hb_000189_130 0.1952203462 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
15 Hb_010578_030 0.1956067572 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
16 Hb_001103_060 0.198457617 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
17 Hb_000327_200 0.1988146456 - - glutathione-s-transferase omega, putative [Ricinus communis]
18 Hb_005694_050 0.1988541867 - - NC domain-containing family protein [Populus trichocarpa]
19 Hb_004162_270 0.2010793914 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
20 Hb_003680_090 0.2031907841 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000018_140 Hb_000018_140 Hb_000176_150 Hb_000176_150 Hb_000018_140--Hb_000176_150 Hb_086122_010 Hb_086122_010 Hb_000018_140--Hb_086122_010 Hb_000270_280 Hb_000270_280 Hb_000018_140--Hb_000270_280 Hb_004648_030 Hb_004648_030 Hb_000018_140--Hb_004648_030 Hb_001842_020 Hb_001842_020 Hb_000018_140--Hb_001842_020 Hb_056196_010 Hb_056196_010 Hb_000018_140--Hb_056196_010 Hb_000176_150--Hb_086122_010 Hb_003929_100 Hb_003929_100 Hb_000176_150--Hb_003929_100 Hb_088500_010 Hb_088500_010 Hb_000176_150--Hb_088500_010 Hb_000189_130 Hb_000189_130 Hb_000176_150--Hb_000189_130 Hb_001322_230 Hb_001322_230 Hb_000176_150--Hb_001322_230 Hb_000402_020 Hb_000402_020 Hb_086122_010--Hb_000402_020 Hb_010578_030 Hb_010578_030 Hb_086122_010--Hb_010578_030 Hb_086122_010--Hb_000189_130 Hb_005618_080 Hb_005618_080 Hb_086122_010--Hb_005618_080 Hb_000212_250 Hb_000212_250 Hb_086122_010--Hb_000212_250 Hb_004117_040 Hb_004117_040 Hb_086122_010--Hb_004117_040 Hb_000310_060 Hb_000310_060 Hb_000270_280--Hb_000310_060 Hb_003680_090 Hb_003680_090 Hb_000270_280--Hb_003680_090 Hb_000940_030 Hb_000940_030 Hb_000270_280--Hb_000940_030 Hb_000270_280--Hb_004648_030 Hb_004162_270 Hb_004162_270 Hb_000270_280--Hb_004162_270 Hb_005784_030 Hb_005784_030 Hb_000270_280--Hb_005784_030 Hb_004223_270 Hb_004223_270 Hb_004648_030--Hb_004223_270 Hb_000334_050 Hb_000334_050 Hb_004648_030--Hb_000334_050 Hb_004648_030--Hb_003680_090 Hb_004648_030--Hb_004162_270 Hb_004648_030--Hb_000940_030 Hb_016219_030 Hb_016219_030 Hb_001842_020--Hb_016219_030 Hb_000560_040 Hb_000560_040 Hb_001842_020--Hb_000560_040 Hb_007904_040 Hb_007904_040 Hb_001842_020--Hb_007904_040 Hb_002759_120 Hb_002759_120 Hb_001842_020--Hb_002759_120 Hb_002053_010 Hb_002053_010 Hb_001842_020--Hb_002053_010 Hb_000388_060 Hb_000388_060 Hb_001842_020--Hb_000388_060 Hb_002716_110 Hb_002716_110 Hb_056196_010--Hb_002716_110 Hb_000679_030 Hb_000679_030 Hb_056196_010--Hb_000679_030 Hb_001014_020 Hb_001014_020 Hb_056196_010--Hb_001014_020 Hb_074109_010 Hb_074109_010 Hb_056196_010--Hb_074109_010 Hb_019762_060 Hb_019762_060 Hb_056196_010--Hb_019762_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0326896 0.211646 0.809187 0.392016 0.0480777 0.0168689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.372978 0.205383 0 0.18782 0.731416

CAGE analysis