Hb_019762_060

Information

Type -
Description -
Location Contig19762: 49678-51498
Sequence    

Annotation

kegg
ID rcu:RCOM_0953390
description hypothetical protein
nr
ID XP_002515858.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQ39
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0953390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19878: 48350-49906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019762_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_056196_010 0.1826701972 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
3 Hb_000203_200 0.2170105698 - - Pollen allergen Che a 1 precursor, putative [Ricinus communis]
4 Hb_000086_320 0.2211913457 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
5 Hb_000018_140 0.2394375221 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
6 Hb_001959_250 0.2431152439 - - hypothetical protein CARUB_v10015435mg [Capsella rubella]
7 Hb_000679_030 0.2529975321 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5 [Jatropha curcas]
8 Hb_001842_020 0.2530791927 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
9 Hb_001793_020 0.2547123329 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
10 Hb_008179_030 0.2575679627 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
11 Hb_000368_120 0.2594184764 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
12 Hb_011310_180 0.2597148862 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
13 Hb_007904_040 0.2597520249 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
14 Hb_000069_360 0.2602922251 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004242_110 0.2614285293 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
16 Hb_000032_140 0.2625972875 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000923_100 0.2635317494 - - chloride channel clc, putative [Ricinus communis]
18 Hb_001864_080 0.26373783 - - PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]
19 Hb_002085_080 0.267496477 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 68-like [Jatropha curcas]
20 Hb_002811_050 0.2677722391 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]

Gene co-expression network

sample Hb_019762_060 Hb_019762_060 Hb_056196_010 Hb_056196_010 Hb_019762_060--Hb_056196_010 Hb_000203_200 Hb_000203_200 Hb_019762_060--Hb_000203_200 Hb_000086_320 Hb_000086_320 Hb_019762_060--Hb_000086_320 Hb_000018_140 Hb_000018_140 Hb_019762_060--Hb_000018_140 Hb_001959_250 Hb_001959_250 Hb_019762_060--Hb_001959_250 Hb_000679_030 Hb_000679_030 Hb_019762_060--Hb_000679_030 Hb_002716_110 Hb_002716_110 Hb_056196_010--Hb_002716_110 Hb_056196_010--Hb_000679_030 Hb_001014_020 Hb_001014_020 Hb_056196_010--Hb_001014_020 Hb_074109_010 Hb_074109_010 Hb_056196_010--Hb_074109_010 Hb_056196_010--Hb_000018_140 Hb_000923_100 Hb_000923_100 Hb_000203_200--Hb_000923_100 Hb_000922_320 Hb_000922_320 Hb_000203_200--Hb_000922_320 Hb_000327_200 Hb_000327_200 Hb_000203_200--Hb_000327_200 Hb_002281_010 Hb_002281_010 Hb_000203_200--Hb_002281_010 Hb_000979_140 Hb_000979_140 Hb_000203_200--Hb_000979_140 Hb_004052_110 Hb_004052_110 Hb_000203_200--Hb_004052_110 Hb_000086_320--Hb_000203_200 Hb_011344_200 Hb_011344_200 Hb_000086_320--Hb_011344_200 Hb_004218_120 Hb_004218_120 Hb_000086_320--Hb_004218_120 Hb_000422_080 Hb_000422_080 Hb_000086_320--Hb_000422_080 Hb_000300_510 Hb_000300_510 Hb_000086_320--Hb_000300_510 Hb_001842_020 Hb_001842_020 Hb_000086_320--Hb_001842_020 Hb_000176_150 Hb_000176_150 Hb_000018_140--Hb_000176_150 Hb_086122_010 Hb_086122_010 Hb_000018_140--Hb_086122_010 Hb_000270_280 Hb_000270_280 Hb_000018_140--Hb_000270_280 Hb_004648_030 Hb_004648_030 Hb_000018_140--Hb_004648_030 Hb_000018_140--Hb_001842_020 Hb_015586_010 Hb_015586_010 Hb_001959_250--Hb_015586_010 Hb_001936_170 Hb_001936_170 Hb_001959_250--Hb_001936_170 Hb_002217_520 Hb_002217_520 Hb_001959_250--Hb_002217_520 Hb_001959_250--Hb_056196_010 Hb_010638_010 Hb_010638_010 Hb_001959_250--Hb_010638_010 Hb_000679_030--Hb_002716_110 Hb_005488_130 Hb_005488_130 Hb_000679_030--Hb_005488_130 Hb_164945_020 Hb_164945_020 Hb_000679_030--Hb_164945_020 Hb_000069_690 Hb_000069_690 Hb_000679_030--Hb_000069_690 Hb_002397_050 Hb_002397_050 Hb_000679_030--Hb_002397_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0995926 0.156886 0.12399 0.015822 0.0161894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0720209 0.084985 0 0 0.176809

CAGE analysis