Hb_002217_520

Information

Type -
Description -
Location Contig2217: 452902-456897
Sequence    

Annotation

kegg
ID rcu:RCOM_1000710
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_011010593.1
description PREDICTED: probable protein phosphatase 2C 42 isoform X3 [Populus euphratica]
swissprot
ID Q0V7V2
description Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1
trembl
ID B9RZS3
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1000710 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22967: 452754-455327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_520 0.0 - - PREDICTED: probable protein phosphatase 2C 42 isoform X3 [Populus euphratica]
2 Hb_001117_120 0.1808611673 - - chloride channel clc, putative [Ricinus communis]
3 Hb_097218_020 0.1880345774 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
4 Hb_062785_010 0.2150776336 - - Organic cation transporter, putative [Ricinus communis]
5 Hb_002094_070 0.2370691082 - - Organic cation transporter, putative [Ricinus communis]
6 Hb_011724_030 0.2459027286 - - Organic cation transporter, putative [Ricinus communis]
7 Hb_010672_030 0.2551771693 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
8 Hb_000018_140 0.2594053494 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
9 Hb_001959_250 0.2630611375 - - hypothetical protein CARUB_v10015435mg [Capsella rubella]
10 Hb_088274_010 0.271280899 - - PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
11 Hb_153269_010 0.2743527237 - - hypothetical protein CICLE_v10029937mg [Citrus clementina]
12 Hb_000092_120 0.2760230377 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
13 Hb_002010_050 0.2765867463 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002552_020 0.2807050952 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
15 Hb_028707_070 0.2820987752 - - short-chain dehydrogenase, putative [Ricinus communis]
16 Hb_000176_150 0.2826301766 - - PREDICTED: lactation elevated protein 1 isoform X2 [Jatropha curcas]
17 Hb_001221_560 0.2841630155 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
18 Hb_003040_040 0.2865053587 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
19 Hb_007218_160 0.2865079747 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
20 Hb_007904_040 0.2886828394 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_520 Hb_002217_520 Hb_001117_120 Hb_001117_120 Hb_002217_520--Hb_001117_120 Hb_097218_020 Hb_097218_020 Hb_002217_520--Hb_097218_020 Hb_062785_010 Hb_062785_010 Hb_002217_520--Hb_062785_010 Hb_002094_070 Hb_002094_070 Hb_002217_520--Hb_002094_070 Hb_011724_030 Hb_011724_030 Hb_002217_520--Hb_011724_030 Hb_010672_030 Hb_010672_030 Hb_002217_520--Hb_010672_030 Hb_001117_120--Hb_097218_020 Hb_003687_030 Hb_003687_030 Hb_001117_120--Hb_003687_030 Hb_001117_120--Hb_062785_010 Hb_000318_080 Hb_000318_080 Hb_001117_120--Hb_000318_080 Hb_139138_010 Hb_139138_010 Hb_001117_120--Hb_139138_010 Hb_153269_010 Hb_153269_010 Hb_097218_020--Hb_153269_010 Hb_001221_560 Hb_001221_560 Hb_097218_020--Hb_001221_560 Hb_003673_040 Hb_003673_040 Hb_097218_020--Hb_003673_040 Hb_021079_010 Hb_021079_010 Hb_097218_020--Hb_021079_010 Hb_062785_010--Hb_002094_070 Hb_000307_120 Hb_000307_120 Hb_062785_010--Hb_000307_120 Hb_062785_010--Hb_011724_030 Hb_009986_010 Hb_009986_010 Hb_062785_010--Hb_009986_010 Hb_002094_070--Hb_011724_030 Hb_002094_070--Hb_000307_120 Hb_002094_070--Hb_001117_120 Hb_007218_160 Hb_007218_160 Hb_002094_070--Hb_007218_160 Hb_031474_030 Hb_031474_030 Hb_011724_030--Hb_031474_030 Hb_011724_030--Hb_001117_120 Hb_000331_520 Hb_000331_520 Hb_011724_030--Hb_000331_520 Hb_008179_010 Hb_008179_010 Hb_010672_030--Hb_008179_010 Hb_001998_200 Hb_001998_200 Hb_010672_030--Hb_001998_200 Hb_002200_070 Hb_002200_070 Hb_010672_030--Hb_002200_070 Hb_003226_200 Hb_003226_200 Hb_010672_030--Hb_003226_200 Hb_000057_130 Hb_000057_130 Hb_010672_030--Hb_000057_130 Hb_000622_060 Hb_000622_060 Hb_010672_030--Hb_000622_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.475078 0.473025 0.431298 0 0.0191481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04045 0.444923 0 0.438993 0.789791

CAGE analysis