Hb_007218_160

Information

Type -
Description -
Location Contig7218: 159943-160811
Sequence    

Annotation

kegg
ID tcc:TCM_028908
description Oxidative stress 3, putative isoform 1
nr
ID XP_011000943.1
description PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061GIQ6
description Oxidative stress 3, putative isoform 2 OS=Theobroma cacao GN=TCM_028908 PE=4 SV=1
Gene Ontology
ID GO:0050896
description oxidative stress isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_160 0.0 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
2 Hb_000684_050 0.1763404406 - - PREDICTED: MLO-like protein 6 [Sesamum indicum]
3 Hb_004837_150 0.1829848492 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
4 Hb_001123_150 0.196675062 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
5 Hb_006816_480 0.2031966044 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
6 Hb_001230_030 0.212118569 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X2 [Populus euphratica]
7 Hb_000331_510 0.2131099479 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
8 Hb_000416_060 0.2141273115 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
9 Hb_012317_020 0.2149267427 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
10 Hb_007850_010 0.221092085 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
11 Hb_003910_050 0.2309796344 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
12 Hb_000340_290 0.2314165302 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]
13 Hb_001404_090 0.2317937162 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
14 Hb_111985_040 0.2324876415 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
15 Hb_001621_010 0.2326713083 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
16 Hb_012812_010 0.2342456475 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
17 Hb_001571_060 0.2344367366 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
18 Hb_004785_080 0.2351351385 - - hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
19 Hb_000920_130 0.2353287551 - - conserved hypothetical protein [Ricinus communis]
20 Hb_019654_110 0.235657794 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]

Gene co-expression network

sample Hb_007218_160 Hb_007218_160 Hb_000684_050 Hb_000684_050 Hb_007218_160--Hb_000684_050 Hb_004837_150 Hb_004837_150 Hb_007218_160--Hb_004837_150 Hb_001123_150 Hb_001123_150 Hb_007218_160--Hb_001123_150 Hb_006816_480 Hb_006816_480 Hb_007218_160--Hb_006816_480 Hb_001230_030 Hb_001230_030 Hb_007218_160--Hb_001230_030 Hb_000331_510 Hb_000331_510 Hb_007218_160--Hb_000331_510 Hb_001404_090 Hb_001404_090 Hb_000684_050--Hb_001404_090 Hb_001124_140 Hb_001124_140 Hb_000684_050--Hb_001124_140 Hb_005305_120 Hb_005305_120 Hb_000684_050--Hb_005305_120 Hb_000684_050--Hb_001230_030 Hb_000684_050--Hb_006816_480 Hb_000416_060 Hb_000416_060 Hb_000684_050--Hb_000416_060 Hb_004837_150--Hb_006816_480 Hb_002217_090 Hb_002217_090 Hb_004837_150--Hb_002217_090 Hb_001699_170 Hb_001699_170 Hb_004837_150--Hb_001699_170 Hb_000110_300 Hb_000110_300 Hb_004837_150--Hb_000110_300 Hb_002046_060 Hb_002046_060 Hb_004837_150--Hb_002046_060 Hb_004837_150--Hb_001123_150 Hb_001123_150--Hb_006816_480 Hb_000656_150 Hb_000656_150 Hb_001123_150--Hb_000656_150 Hb_001123_150--Hb_002046_060 Hb_001123_150--Hb_000110_300 Hb_000540_100 Hb_000540_100 Hb_001123_150--Hb_000540_100 Hb_006816_480--Hb_000331_510 Hb_006816_480--Hb_000110_300 Hb_001956_060 Hb_001956_060 Hb_006816_480--Hb_001956_060 Hb_006816_480--Hb_002046_060 Hb_012812_010 Hb_012812_010 Hb_001230_030--Hb_012812_010 Hb_000340_290 Hb_000340_290 Hb_001230_030--Hb_000340_290 Hb_002400_160 Hb_002400_160 Hb_001230_030--Hb_002400_160 Hb_001488_040 Hb_001488_040 Hb_001230_030--Hb_001488_040 Hb_001230_030--Hb_000331_510 Hb_001571_060 Hb_001571_060 Hb_000331_510--Hb_001571_060 Hb_000205_250 Hb_000205_250 Hb_000331_510--Hb_000205_250 Hb_000345_320 Hb_000345_320 Hb_000331_510--Hb_000345_320 Hb_000666_010 Hb_000666_010 Hb_000331_510--Hb_000666_010 Hb_000227_330 Hb_000227_330 Hb_000331_510--Hb_000227_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.239374 1.62554 0.279932 0.823331 0 0.208295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.907693 0.416284 0.106681 0.990026 1.65621

CAGE analysis