Hb_062785_010

Information

Type -
Description -
Location Contig62785: 790-1968
Sequence    

Annotation

kegg
ID rcu:RCOM_0987060
description Organic cation transporter, putative
nr
ID XP_002530918.1
description Organic cation transporter, putative [Ricinus communis]
swissprot
ID Q9LHQ6
description Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1
trembl
ID B9SY49
description Organic cation transporter, putative OS=Ricinus communis GN=RCOM_0987060 PE=4 SV=1
Gene Ontology
ID GO:0009535
description organic cation carnitine transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062785_010 0.0 - - Organic cation transporter, putative [Ricinus communis]
2 Hb_002094_070 0.1128107732 - - Organic cation transporter, putative [Ricinus communis]
3 Hb_000307_120 0.1896821823 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
4 Hb_011724_030 0.1936999579 - - Organic cation transporter, putative [Ricinus communis]
5 Hb_002217_520 0.2150776336 - - PREDICTED: probable protein phosphatase 2C 42 isoform X3 [Populus euphratica]
6 Hb_001117_120 0.2299887794 - - chloride channel clc, putative [Ricinus communis]
7 Hb_009986_010 0.2630330096 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_124996_010 0.2715204735 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
9 Hb_007218_160 0.2838150811 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
10 Hb_097218_020 0.2983274415 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
11 Hb_003687_030 0.2995711106 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_004116_130 0.2998807206 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_000504_110 0.301344304 - - F-box/LRR-repeat protein, putative [Ricinus communis]
14 Hb_000883_040 0.3048586871 - - -
15 Hb_015586_010 0.3065057354 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
16 Hb_001621_010 0.3080807013 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
17 Hb_004837_150 0.3081425212 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
18 Hb_027380_200 0.308213893 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
19 Hb_005539_270 0.3116568298 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_028707_070 0.3156440983 - - short-chain dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_062785_010 Hb_062785_010 Hb_002094_070 Hb_002094_070 Hb_062785_010--Hb_002094_070 Hb_000307_120 Hb_000307_120 Hb_062785_010--Hb_000307_120 Hb_011724_030 Hb_011724_030 Hb_062785_010--Hb_011724_030 Hb_002217_520 Hb_002217_520 Hb_062785_010--Hb_002217_520 Hb_001117_120 Hb_001117_120 Hb_062785_010--Hb_001117_120 Hb_009986_010 Hb_009986_010 Hb_062785_010--Hb_009986_010 Hb_002094_070--Hb_011724_030 Hb_002094_070--Hb_002217_520 Hb_002094_070--Hb_000307_120 Hb_002094_070--Hb_001117_120 Hb_007218_160 Hb_007218_160 Hb_002094_070--Hb_007218_160 Hb_005363_010 Hb_005363_010 Hb_000307_120--Hb_005363_010 Hb_124996_010 Hb_124996_010 Hb_000307_120--Hb_124996_010 Hb_118094_010 Hb_118094_010 Hb_000307_120--Hb_118094_010 Hb_000162_220 Hb_000162_220 Hb_000307_120--Hb_000162_220 Hb_031474_030 Hb_031474_030 Hb_011724_030--Hb_031474_030 Hb_011724_030--Hb_002217_520 Hb_011724_030--Hb_001117_120 Hb_000331_520 Hb_000331_520 Hb_011724_030--Hb_000331_520 Hb_002217_520--Hb_001117_120 Hb_097218_020 Hb_097218_020 Hb_002217_520--Hb_097218_020 Hb_010672_030 Hb_010672_030 Hb_002217_520--Hb_010672_030 Hb_001117_120--Hb_097218_020 Hb_003687_030 Hb_003687_030 Hb_001117_120--Hb_003687_030 Hb_000318_080 Hb_000318_080 Hb_001117_120--Hb_000318_080 Hb_139138_010 Hb_139138_010 Hb_001117_120--Hb_139138_010 Hb_009986_010--Hb_002094_070 Hb_009986_010--Hb_007218_160 Hb_001115_020 Hb_001115_020 Hb_009986_010--Hb_001115_020 Hb_000684_050 Hb_000684_050 Hb_009986_010--Hb_000684_050 Hb_000243_150 Hb_000243_150 Hb_009986_010--Hb_000243_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.742596 11.8451 2.18366 8.21536 0.273106 0.235877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5064 4.95451 0 4.61079 7.74993

CAGE analysis