Hb_011724_030

Information

Type -
Description -
Location Contig11724: 39032-41277
Sequence    

Annotation

kegg
ID rcu:RCOM_0987060
description Organic cation transporter, putative
nr
ID XP_002530918.1
description Organic cation transporter, putative [Ricinus communis]
swissprot
ID Q9LHQ6
description Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1
trembl
ID B9SY49
description Organic cation transporter, putative OS=Ricinus communis GN=RCOM_0987060 PE=4 SV=1
Gene Ontology
ID GO:0016020
description organic cation carnitine transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05339: 37328-40501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011724_030 0.0 - - Organic cation transporter, putative [Ricinus communis]
2 Hb_062785_010 0.1936999579 - - Organic cation transporter, putative [Ricinus communis]
3 Hb_031474_030 0.2045355282 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_002094_070 0.2248112622 - - Organic cation transporter, putative [Ricinus communis]
5 Hb_002217_520 0.2459027286 - - PREDICTED: probable protein phosphatase 2C 42 isoform X3 [Populus euphratica]
6 Hb_001117_120 0.2718313478 - - chloride channel clc, putative [Ricinus communis]
7 Hb_000331_520 0.2878145289 - - Esterase precursor, putative [Ricinus communis]
8 Hb_124621_010 0.2895673549 - - hypothetical protein L484_019698 [Morus notabilis]
9 Hb_030131_010 0.2924208971 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal, partial [Jatropha curcas]
10 Hb_006452_230 0.3070725302 - - PREDICTED: uncharacterized protein LOC105635044 [Jatropha curcas]
11 Hb_107221_010 0.3141348192 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_005615_060 0.3221946546 - - PREDICTED: uncharacterized protein LOC105636752 [Jatropha curcas]
13 Hb_001959_250 0.3246024825 - - hypothetical protein CARUB_v10015435mg [Capsella rubella]
14 Hb_097218_020 0.3291621308 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
15 Hb_057207_010 0.3310188152 - - hypothetical protein F383_17010 [Gossypium arboreum]
16 Hb_001366_070 0.3330023424 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
17 Hb_139138_010 0.3330536196 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
18 Hb_004136_030 0.3420583151 - - -
19 Hb_027751_010 0.3429460667 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_001335_050 0.3433258023 - - -

Gene co-expression network

sample Hb_011724_030 Hb_011724_030 Hb_062785_010 Hb_062785_010 Hb_011724_030--Hb_062785_010 Hb_031474_030 Hb_031474_030 Hb_011724_030--Hb_031474_030 Hb_002094_070 Hb_002094_070 Hb_011724_030--Hb_002094_070 Hb_002217_520 Hb_002217_520 Hb_011724_030--Hb_002217_520 Hb_001117_120 Hb_001117_120 Hb_011724_030--Hb_001117_120 Hb_000331_520 Hb_000331_520 Hb_011724_030--Hb_000331_520 Hb_062785_010--Hb_002094_070 Hb_000307_120 Hb_000307_120 Hb_062785_010--Hb_000307_120 Hb_062785_010--Hb_002217_520 Hb_062785_010--Hb_001117_120 Hb_009986_010 Hb_009986_010 Hb_062785_010--Hb_009986_010 Hb_124621_010 Hb_124621_010 Hb_031474_030--Hb_124621_010 Hb_027751_010 Hb_027751_010 Hb_031474_030--Hb_027751_010 Hb_107221_010 Hb_107221_010 Hb_031474_030--Hb_107221_010 Hb_005615_060 Hb_005615_060 Hb_031474_030--Hb_005615_060 Hb_065858_010 Hb_065858_010 Hb_031474_030--Hb_065858_010 Hb_002094_070--Hb_002217_520 Hb_002094_070--Hb_000307_120 Hb_002094_070--Hb_001117_120 Hb_007218_160 Hb_007218_160 Hb_002094_070--Hb_007218_160 Hb_002217_520--Hb_001117_120 Hb_097218_020 Hb_097218_020 Hb_002217_520--Hb_097218_020 Hb_010672_030 Hb_010672_030 Hb_002217_520--Hb_010672_030 Hb_001117_120--Hb_097218_020 Hb_003687_030 Hb_003687_030 Hb_001117_120--Hb_003687_030 Hb_000318_080 Hb_000318_080 Hb_001117_120--Hb_000318_080 Hb_139138_010 Hb_139138_010 Hb_001117_120--Hb_139138_010 Hb_172665_010 Hb_172665_010 Hb_000331_520--Hb_172665_010 Hb_030131_010 Hb_030131_010 Hb_000331_520--Hb_030131_010 Hb_006452_230 Hb_006452_230 Hb_000331_520--Hb_006452_230 Hb_007157_010 Hb_007157_010 Hb_000331_520--Hb_007157_010 Hb_161207_010 Hb_161207_010 Hb_000331_520--Hb_161207_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.053352 0.515171 0.115188 0.248593 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7783 0.493751 0 0.175431 0.914307

CAGE analysis