Hb_172665_010

Information

Type -
Description -
Location Contig172665: 11-532
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172665_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000331_520 0.2339258799 - - Esterase precursor, putative [Ricinus communis]
3 Hb_007157_010 0.2347235333 - - -
4 Hb_000837_010 0.252236792 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
5 Hb_001519_020 0.2618161197 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
6 Hb_052764_100 0.2625909825 - - PREDICTED: beta-galactosidase 8-like [Jatropha curcas]
7 Hb_006452_230 0.2653454331 - - PREDICTED: uncharacterized protein LOC105635044 [Jatropha curcas]
8 Hb_158235_010 0.2743562372 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
9 Hb_161207_010 0.2774811692 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
10 Hb_004218_260 0.2849925634 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
11 Hb_001157_170 0.2900177498 - - PREDICTED: uncharacterized protein LOC104597617 [Nelumbo nucifera]
12 Hb_104721_010 0.2945705334 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
13 Hb_000445_200 0.2945922632 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
14 Hb_004662_020 0.2947453313 - - 40S ribosomal protein S9, putative [Ricinus communis]
15 Hb_005496_100 0.3018857292 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
16 Hb_005054_240 0.3045661075 - - conserved hypothetical protein [Ricinus communis]
17 Hb_021428_010 0.312092017 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
18 Hb_000184_030 0.3156592785 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
19 Hb_186054_010 0.3159817692 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_001124_200 0.3165628421 - - hypothetical protein B456_011G186000 [Gossypium raimondii]

Gene co-expression network

sample Hb_172665_010 Hb_172665_010 Hb_000331_520 Hb_000331_520 Hb_172665_010--Hb_000331_520 Hb_007157_010 Hb_007157_010 Hb_172665_010--Hb_007157_010 Hb_000837_010 Hb_000837_010 Hb_172665_010--Hb_000837_010 Hb_001519_020 Hb_001519_020 Hb_172665_010--Hb_001519_020 Hb_052764_100 Hb_052764_100 Hb_172665_010--Hb_052764_100 Hb_006452_230 Hb_006452_230 Hb_172665_010--Hb_006452_230 Hb_030131_010 Hb_030131_010 Hb_000331_520--Hb_030131_010 Hb_000331_520--Hb_006452_230 Hb_000331_520--Hb_007157_010 Hb_161207_010 Hb_161207_010 Hb_000331_520--Hb_161207_010 Hb_011724_030 Hb_011724_030 Hb_000331_520--Hb_011724_030 Hb_007157_010--Hb_006452_230 Hb_007157_010--Hb_001519_020 Hb_007157_010--Hb_000837_010 Hb_104721_010 Hb_104721_010 Hb_007157_010--Hb_104721_010 Hb_006938_050 Hb_006938_050 Hb_000837_010--Hb_006938_050 Hb_001558_050 Hb_001558_050 Hb_000837_010--Hb_001558_050 Hb_000837_010--Hb_052764_100 Hb_004218_260 Hb_004218_260 Hb_000837_010--Hb_004218_260 Hb_000460_070 Hb_000460_070 Hb_000837_010--Hb_000460_070 Hb_158235_010 Hb_158235_010 Hb_001519_020--Hb_158235_010 Hb_003020_290 Hb_003020_290 Hb_001519_020--Hb_003020_290 Hb_005496_100 Hb_005496_100 Hb_001519_020--Hb_005496_100 Hb_000757_090 Hb_000757_090 Hb_001519_020--Hb_000757_090 Hb_001344_030 Hb_001344_030 Hb_001519_020--Hb_001344_030 Hb_052764_100--Hb_004218_260 Hb_010815_020 Hb_010815_020 Hb_052764_100--Hb_010815_020 Hb_000203_140 Hb_000203_140 Hb_052764_100--Hb_000203_140 Hb_002360_030 Hb_002360_030 Hb_052764_100--Hb_002360_030 Hb_007054_050 Hb_007054_050 Hb_052764_100--Hb_007054_050 Hb_006452_230--Hb_030131_010 Hb_000402_100 Hb_000402_100 Hb_006452_230--Hb_000402_100 Hb_001366_070 Hb_001366_070 Hb_006452_230--Hb_001366_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.116622 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.125163 0.0983379 0 0.0814512 0.371086

CAGE analysis