Hb_001344_030

Information

Type -
Description -
Location Contig1344: 51330-63315
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001344_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000757_090 0.1219191442 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
3 Hb_186054_010 0.1219887504 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_156924_020 0.1616649569 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
5 Hb_158235_010 0.1933139457 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
6 Hb_104721_010 0.2256237896 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
7 Hb_094852_010 0.2273769901 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_003020_290 0.2373380367 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
9 Hb_001519_020 0.2562291854 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
10 Hb_000387_090 0.2652907879 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
11 Hb_000043_100 0.2677013234 - - PREDICTED: uncharacterized protein LOC105797583 [Gossypium raimondii]
12 Hb_012938_010 0.2686365531 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_004656_080 0.2793489395 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_071130_040 0.2809296643 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003607_100 0.2842682157 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
16 Hb_008375_020 0.2892864627 - - PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
17 Hb_178654_020 0.2945793034 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
18 Hb_013253_030 0.3013715319 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
19 Hb_028910_010 0.3028879543 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_007479_030 0.3041618829 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001344_030 Hb_001344_030 Hb_000757_090 Hb_000757_090 Hb_001344_030--Hb_000757_090 Hb_186054_010 Hb_186054_010 Hb_001344_030--Hb_186054_010 Hb_156924_020 Hb_156924_020 Hb_001344_030--Hb_156924_020 Hb_158235_010 Hb_158235_010 Hb_001344_030--Hb_158235_010 Hb_104721_010 Hb_104721_010 Hb_001344_030--Hb_104721_010 Hb_094852_010 Hb_094852_010 Hb_001344_030--Hb_094852_010 Hb_000757_090--Hb_156924_020 Hb_000757_090--Hb_094852_010 Hb_000757_090--Hb_186054_010 Hb_178654_020 Hb_178654_020 Hb_000757_090--Hb_178654_020 Hb_012938_010 Hb_012938_010 Hb_000757_090--Hb_012938_010 Hb_186054_010--Hb_104721_010 Hb_186054_010--Hb_156924_020 Hb_186054_010--Hb_158235_010 Hb_186054_010--Hb_094852_010 Hb_156924_020--Hb_094852_010 Hb_156924_020--Hb_178654_020 Hb_065858_010 Hb_065858_010 Hb_156924_020--Hb_065858_010 Hb_001519_020 Hb_001519_020 Hb_158235_010--Hb_001519_020 Hb_003020_290 Hb_003020_290 Hb_158235_010--Hb_003020_290 Hb_013253_030 Hb_013253_030 Hb_158235_010--Hb_013253_030 Hb_000043_100 Hb_000043_100 Hb_158235_010--Hb_000043_100 Hb_005496_100 Hb_005496_100 Hb_158235_010--Hb_005496_100 Hb_012717_030 Hb_012717_030 Hb_104721_010--Hb_012717_030 Hb_005654_010 Hb_005654_010 Hb_104721_010--Hb_005654_010 Hb_104721_010--Hb_000757_090 Hb_005542_170 Hb_005542_170 Hb_104721_010--Hb_005542_170 Hb_094852_010--Hb_178654_020 Hb_094852_010--Hb_065858_010 Hb_124621_010 Hb_124621_010 Hb_094852_010--Hb_124621_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00974838 0.00767179 0 0 0.0329231

CAGE analysis