Hb_186054_010

Information

Type -
Description -
Location Contig186054: 96-3224
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186054_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_001344_030 0.1219887504 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_104721_010 0.1335396791 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
4 Hb_000757_090 0.1709955046 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
5 Hb_156924_020 0.2006237715 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
6 Hb_158235_010 0.2271651658 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
7 Hb_094852_010 0.2555312362 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_005654_010 0.2612227766 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_003020_290 0.2645673598 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
10 Hb_012717_030 0.264735098 - - hypothetical protein, partial [Pseudomonas fluorescens]
11 Hb_001519_020 0.2812025439 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
12 Hb_000445_200 0.28225294 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_033152_040 0.2870965613 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
14 Hb_002536_020 0.2876732705 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
15 Hb_000387_090 0.2894815389 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
16 Hb_007749_030 0.2916627717 - - -
17 Hb_012938_010 0.2921274592 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_000043_100 0.2922721873 - - PREDICTED: uncharacterized protein LOC105797583 [Gossypium raimondii]
19 Hb_000375_180 0.3009456295 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
20 Hb_004656_080 0.3024626069 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_186054_010 Hb_186054_010 Hb_001344_030 Hb_001344_030 Hb_186054_010--Hb_001344_030 Hb_104721_010 Hb_104721_010 Hb_186054_010--Hb_104721_010 Hb_000757_090 Hb_000757_090 Hb_186054_010--Hb_000757_090 Hb_156924_020 Hb_156924_020 Hb_186054_010--Hb_156924_020 Hb_158235_010 Hb_158235_010 Hb_186054_010--Hb_158235_010 Hb_094852_010 Hb_094852_010 Hb_186054_010--Hb_094852_010 Hb_001344_030--Hb_000757_090 Hb_001344_030--Hb_156924_020 Hb_001344_030--Hb_158235_010 Hb_001344_030--Hb_104721_010 Hb_001344_030--Hb_094852_010 Hb_012717_030 Hb_012717_030 Hb_104721_010--Hb_012717_030 Hb_005654_010 Hb_005654_010 Hb_104721_010--Hb_005654_010 Hb_104721_010--Hb_000757_090 Hb_005542_170 Hb_005542_170 Hb_104721_010--Hb_005542_170 Hb_000757_090--Hb_156924_020 Hb_000757_090--Hb_094852_010 Hb_178654_020 Hb_178654_020 Hb_000757_090--Hb_178654_020 Hb_012938_010 Hb_012938_010 Hb_000757_090--Hb_012938_010 Hb_156924_020--Hb_094852_010 Hb_156924_020--Hb_178654_020 Hb_065858_010 Hb_065858_010 Hb_156924_020--Hb_065858_010 Hb_001519_020 Hb_001519_020 Hb_158235_010--Hb_001519_020 Hb_003020_290 Hb_003020_290 Hb_158235_010--Hb_003020_290 Hb_013253_030 Hb_013253_030 Hb_158235_010--Hb_013253_030 Hb_000043_100 Hb_000043_100 Hb_158235_010--Hb_000043_100 Hb_005496_100 Hb_005496_100 Hb_158235_010--Hb_005496_100 Hb_094852_010--Hb_178654_020 Hb_094852_010--Hb_065858_010 Hb_124621_010 Hb_124621_010 Hb_094852_010--Hb_124621_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0291895 0.0229699 0 0.00455538 0.0980067

CAGE analysis