Hb_065858_010

Information

Type -
Description -
Location Contig65858: 2457-3929
Sequence    

Annotation

kegg
ID pda:103696510
description uncharacterized LOC103696510
nr
ID XP_009778385.1
description PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A5BKJ7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018924 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065858_010 0.0 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
2 Hb_094852_010 0.1339806436 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_178654_020 0.1773538594 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
4 Hb_124621_010 0.2139004751 - - hypothetical protein L484_019698 [Morus notabilis]
5 Hb_156924_020 0.2191694776 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
6 Hb_005615_060 0.2439129383 - - PREDICTED: uncharacterized protein LOC105636752 [Jatropha curcas]
7 Hb_000757_090 0.2464886849 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
8 Hb_008879_010 0.286160652 - - Beta-ureidopropionase, putative [Ricinus communis]
9 Hb_031474_030 0.3111176739 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
10 Hb_000449_060 0.3178623794 - - -
11 Hb_012938_010 0.3186199552 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_002325_080 0.3240824242 - - -
13 Hb_071130_040 0.327477397 - - conserved hypothetical protein [Ricinus communis]
14 Hb_041813_020 0.3319494258 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]
15 Hb_001595_060 0.3334034077 - - hypothetical protein L484_001429 [Morus notabilis]
16 Hb_006267_050 0.3336776648 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
17 Hb_002811_340 0.3345399441 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
18 Hb_001344_030 0.3357883601 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_011206_030 0.3365924709 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
20 Hb_048953_010 0.3365924709 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]

Gene co-expression network

sample Hb_065858_010 Hb_065858_010 Hb_094852_010 Hb_094852_010 Hb_065858_010--Hb_094852_010 Hb_178654_020 Hb_178654_020 Hb_065858_010--Hb_178654_020 Hb_124621_010 Hb_124621_010 Hb_065858_010--Hb_124621_010 Hb_156924_020 Hb_156924_020 Hb_065858_010--Hb_156924_020 Hb_005615_060 Hb_005615_060 Hb_065858_010--Hb_005615_060 Hb_000757_090 Hb_000757_090 Hb_065858_010--Hb_000757_090 Hb_094852_010--Hb_156924_020 Hb_094852_010--Hb_178654_020 Hb_094852_010--Hb_000757_090 Hb_094852_010--Hb_124621_010 Hb_001344_030 Hb_001344_030 Hb_094852_010--Hb_001344_030 Hb_178654_020--Hb_156924_020 Hb_178654_020--Hb_000757_090 Hb_178654_020--Hb_124621_010 Hb_012938_010 Hb_012938_010 Hb_178654_020--Hb_012938_010 Hb_071130_040 Hb_071130_040 Hb_124621_010--Hb_071130_040 Hb_124621_010--Hb_012938_010 Hb_031474_030 Hb_031474_030 Hb_124621_010--Hb_031474_030 Hb_156924_020--Hb_000757_090 Hb_156924_020--Hb_001344_030 Hb_186054_010 Hb_186054_010 Hb_156924_020--Hb_186054_010 Hb_001936_170 Hb_001936_170 Hb_005615_060--Hb_001936_170 Hb_000449_060 Hb_000449_060 Hb_005615_060--Hb_000449_060 Hb_015807_110 Hb_015807_110 Hb_005615_060--Hb_015807_110 Hb_005615_060--Hb_031474_030 Hb_011724_030 Hb_011724_030 Hb_005615_060--Hb_011724_030 Hb_000757_090--Hb_001344_030 Hb_000757_090--Hb_186054_010 Hb_000757_090--Hb_012938_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100639 0.0263908 0 0 0.0550625

CAGE analysis