Hb_001936_170

Information

Type -
Description -
Location Contig1936: 141686-141994
Sequence    

Annotation

kegg
ID rcu:RCOM_0529260
description hypothetical protein
nr
ID XP_002525399.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHD0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0529260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004883_010 0.2295683693 - - hypothetical protein JCGZ_23144 [Jatropha curcas]
3 Hb_001959_250 0.2580828458 - - hypothetical protein CARUB_v10015435mg [Capsella rubella]
4 Hb_005615_060 0.2984703806 - - PREDICTED: uncharacterized protein LOC105636752 [Jatropha curcas]
5 Hb_002081_170 0.3098366723 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
6 Hb_000431_120 0.3144472396 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
7 Hb_006452_230 0.3166569117 - - PREDICTED: uncharacterized protein LOC105635044 [Jatropha curcas]
8 Hb_004586_200 0.3172249493 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
9 Hb_000175_190 0.3201092764 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
10 Hb_030131_010 0.3251342994 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal, partial [Jatropha curcas]
11 Hb_000742_030 0.3345738148 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
12 Hb_001519_020 0.3378392467 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
13 Hb_168392_010 0.3379608831 - - multidrug resistance pump, putative [Ricinus communis]
14 Hb_079513_010 0.3381398211 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
15 Hb_007157_010 0.3385657374 - - -
16 Hb_003120_100 0.341780577 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
17 Hb_000345_080 0.3442157598 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
18 Hb_000331_520 0.3465704266 - - Esterase precursor, putative [Ricinus communis]
19 Hb_004545_010 0.3483759583 - - acyl carrier protein [Ricinus communis]
20 Hb_000310_070 0.349978103 - - BnaA06g08330D [Brassica napus]

Gene co-expression network

sample Hb_001936_170 Hb_001936_170 Hb_004883_010 Hb_004883_010 Hb_001936_170--Hb_004883_010 Hb_001959_250 Hb_001959_250 Hb_001936_170--Hb_001959_250 Hb_005615_060 Hb_005615_060 Hb_001936_170--Hb_005615_060 Hb_002081_170 Hb_002081_170 Hb_001936_170--Hb_002081_170 Hb_000431_120 Hb_000431_120 Hb_001936_170--Hb_000431_120 Hb_006452_230 Hb_006452_230 Hb_001936_170--Hb_006452_230 Hb_168392_010 Hb_168392_010 Hb_004883_010--Hb_168392_010 Hb_004883_010--Hb_000431_120 Hb_000510_280 Hb_000510_280 Hb_004883_010--Hb_000510_280 Hb_000742_030 Hb_000742_030 Hb_004883_010--Hb_000742_030 Hb_003304_110 Hb_003304_110 Hb_004883_010--Hb_003304_110 Hb_019762_060 Hb_019762_060 Hb_001959_250--Hb_019762_060 Hb_015586_010 Hb_015586_010 Hb_001959_250--Hb_015586_010 Hb_002217_520 Hb_002217_520 Hb_001959_250--Hb_002217_520 Hb_056196_010 Hb_056196_010 Hb_001959_250--Hb_056196_010 Hb_010638_010 Hb_010638_010 Hb_001959_250--Hb_010638_010 Hb_065858_010 Hb_065858_010 Hb_005615_060--Hb_065858_010 Hb_000449_060 Hb_000449_060 Hb_005615_060--Hb_000449_060 Hb_015807_110 Hb_015807_110 Hb_005615_060--Hb_015807_110 Hb_031474_030 Hb_031474_030 Hb_005615_060--Hb_031474_030 Hb_011724_030 Hb_011724_030 Hb_005615_060--Hb_011724_030 Hb_044555_010 Hb_044555_010 Hb_002081_170--Hb_044555_010 Hb_004200_030 Hb_004200_030 Hb_002081_170--Hb_004200_030 Hb_004097_040 Hb_004097_040 Hb_002081_170--Hb_004097_040 Hb_001563_020 Hb_001563_020 Hb_002081_170--Hb_001563_020 Hb_033594_070 Hb_033594_070 Hb_002081_170--Hb_033594_070 Hb_007386_010 Hb_007386_010 Hb_002081_170--Hb_007386_010 Hb_000431_120--Hb_168392_010 Hb_017358_080 Hb_017358_080 Hb_000431_120--Hb_017358_080 Hb_000431_120--Hb_003304_110 Hb_000431_120--Hb_000742_030 Hb_000226_120 Hb_000226_120 Hb_000431_120--Hb_000226_120 Hb_007157_010 Hb_007157_010 Hb_006452_230--Hb_007157_010 Hb_030131_010 Hb_030131_010 Hb_006452_230--Hb_030131_010 Hb_000331_520 Hb_000331_520 Hb_006452_230--Hb_000331_520 Hb_000402_100 Hb_000402_100 Hb_006452_230--Hb_000402_100 Hb_172665_010 Hb_172665_010 Hb_006452_230--Hb_172665_010 Hb_001366_070 Hb_001366_070 Hb_006452_230--Hb_001366_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.495005 1.69087 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43474 1.36901 0 0 1.7196

CAGE analysis