Hb_000449_060

Information

Type -
Description -
Location Contig449: 26413-31704
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43109: 29557-31984
cDNA
(Sanger)
(ID:Location)		 001_O23.ab1: 30094-31984 , 003_E20.ab1: 30125-31984

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000449_060 0.0 - - -
2 Hb_006351_070 0.3066867291 - - heat-shock protein, putative [Ricinus communis]
3 Hb_005615_060 0.3071750507 - - PREDICTED: uncharacterized protein LOC105636752 [Jatropha curcas]
4 Hb_000258_100 0.3080667518 - - conserved hypothetical protein [Ricinus communis]
5 Hb_065858_010 0.3178623794 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
6 Hb_003001_100 0.3289936688 - - PREDICTED: uncharacterized protein LOC103334281 [Prunus mume]
7 Hb_178654_020 0.3342090767 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
8 Hb_002811_340 0.340406486 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
9 Hb_094852_010 0.3431950738 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
10 Hb_000028_120 0.3473483589 - - Os03g0221800 [Oryza sativa Japonica Group]
11 Hb_000574_460 0.3513031285 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
12 Hb_000429_100 0.3561825908 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
13 Hb_000067_020 0.356553096 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
14 Hb_031474_030 0.3569230433 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
15 Hb_002636_020 0.3578945662 - - -
16 Hb_000738_010 0.3599158062 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
17 Hb_000094_260 0.3605388392 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007520_010 0.365354177 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
19 Hb_001437_050 0.3667969875 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
20 Hb_007416_040 0.3691775717 - - glutamate receptor 2 plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_000449_060 Hb_000449_060 Hb_006351_070 Hb_006351_070 Hb_000449_060--Hb_006351_070 Hb_005615_060 Hb_005615_060 Hb_000449_060--Hb_005615_060 Hb_000258_100 Hb_000258_100 Hb_000449_060--Hb_000258_100 Hb_065858_010 Hb_065858_010 Hb_000449_060--Hb_065858_010 Hb_003001_100 Hb_003001_100 Hb_000449_060--Hb_003001_100 Hb_178654_020 Hb_178654_020 Hb_000449_060--Hb_178654_020 Hb_011242_030 Hb_011242_030 Hb_006351_070--Hb_011242_030 Hb_001529_070 Hb_001529_070 Hb_006351_070--Hb_001529_070 Hb_000175_580 Hb_000175_580 Hb_006351_070--Hb_000175_580 Hb_001437_050 Hb_001437_050 Hb_006351_070--Hb_001437_050 Hb_015807_110 Hb_015807_110 Hb_006351_070--Hb_015807_110 Hb_002685_180 Hb_002685_180 Hb_006351_070--Hb_002685_180 Hb_005615_060--Hb_065858_010 Hb_001936_170 Hb_001936_170 Hb_005615_060--Hb_001936_170 Hb_005615_060--Hb_015807_110 Hb_031474_030 Hb_031474_030 Hb_005615_060--Hb_031474_030 Hb_011724_030 Hb_011724_030 Hb_005615_060--Hb_011724_030 Hb_007520_010 Hb_007520_010 Hb_000258_100--Hb_007520_010 Hb_101133_020 Hb_101133_020 Hb_000258_100--Hb_101133_020 Hb_107504_010 Hb_107504_010 Hb_000258_100--Hb_107504_010 Hb_104010_010 Hb_104010_010 Hb_000258_100--Hb_104010_010 Hb_004108_090 Hb_004108_090 Hb_000258_100--Hb_004108_090 Hb_000169_140 Hb_000169_140 Hb_000258_100--Hb_000169_140 Hb_094852_010 Hb_094852_010 Hb_065858_010--Hb_094852_010 Hb_065858_010--Hb_178654_020 Hb_124621_010 Hb_124621_010 Hb_065858_010--Hb_124621_010 Hb_156924_020 Hb_156924_020 Hb_065858_010--Hb_156924_020 Hb_000757_090 Hb_000757_090 Hb_065858_010--Hb_000757_090 Hb_000173_100 Hb_000173_100 Hb_003001_100--Hb_000173_100 Hb_004958_030 Hb_004958_030 Hb_003001_100--Hb_004958_030 Hb_000067_020 Hb_000067_020 Hb_003001_100--Hb_000067_020 Hb_102438_010 Hb_102438_010 Hb_003001_100--Hb_102438_010 Hb_159085_010 Hb_159085_010 Hb_003001_100--Hb_159085_010 Hb_000008_260 Hb_000008_260 Hb_003001_100--Hb_000008_260 Hb_178654_020--Hb_094852_010 Hb_178654_020--Hb_156924_020 Hb_178654_020--Hb_000757_090 Hb_178654_020--Hb_124621_010 Hb_012938_010 Hb_012938_010 Hb_178654_020--Hb_012938_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0509598 0 0.0338884 0.029891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.311243 0.122346 0 0 0.121399

CAGE analysis