Hb_000175_580

Information

Type transcription factor, desease resistance
Description TF Family: C3H, Gene Name: zf-CCCH
Location Contig175: 396119-404259
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00890g
description POPTRDRAFT_773580; hypothetical protein
nr
ID XP_002318943.2
description hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID B9I6Q3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00890g PE=4 SV=2
Gene Ontology
ID GO:0032550
description cc-nbs-lrr resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16742: 402524-403029 , PASA_asmbl_16743: 404412-412428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_580 0.0 transcription factor, desease resistance TF Family: C3H, Gene Name: zf-CCCH hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
2 Hb_160366_010 0.2384799725 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
3 Hb_001529_070 0.2421048166 transcription factor TF Family: AP2 hypothetical protein POPTR_0018s09900g [Populus trichocarpa]
4 Hb_000123_200 0.242851811 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
5 Hb_021906_010 0.245370425 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
6 Hb_141408_010 0.2457664661 - - PREDICTED: uncharacterized protein LOC105631382 [Jatropha curcas]
7 Hb_002099_010 0.2502291921 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
8 Hb_000046_200 0.25106096 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
9 Hb_007386_010 0.2546932373 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
10 Hb_003675_010 0.2567078917 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
11 Hb_002094_040 0.2585307049 - - Organic cation transporter protein [Aegilops tauschii]
12 Hb_004097_040 0.2619419047 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
13 Hb_084889_010 0.2639012887 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
14 Hb_001865_110 0.264485526 - - -
15 Hb_000270_820 0.2660734694 - - -
16 Hb_005834_030 0.2665678081 - - -
17 Hb_000094_260 0.2707126048 - - conserved hypothetical protein [Ricinus communis]
18 Hb_032974_010 0.2708136913 - - -
19 Hb_000510_380 0.272731808 - - -
20 Hb_000482_130 0.2727328583 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_000175_580 Hb_000175_580 Hb_160366_010 Hb_160366_010 Hb_000175_580--Hb_160366_010 Hb_001529_070 Hb_001529_070 Hb_000175_580--Hb_001529_070 Hb_000123_200 Hb_000123_200 Hb_000175_580--Hb_000123_200 Hb_021906_010 Hb_021906_010 Hb_000175_580--Hb_021906_010 Hb_141408_010 Hb_141408_010 Hb_000175_580--Hb_141408_010 Hb_002099_010 Hb_002099_010 Hb_000175_580--Hb_002099_010 Hb_160366_010--Hb_000123_200 Hb_160366_010--Hb_002099_010 Hb_007416_040 Hb_007416_040 Hb_160366_010--Hb_007416_040 Hb_011349_010 Hb_011349_010 Hb_160366_010--Hb_011349_010 Hb_156554_010 Hb_156554_010 Hb_160366_010--Hb_156554_010 Hb_033594_070 Hb_033594_070 Hb_001529_070--Hb_033594_070 Hb_002081_170 Hb_002081_170 Hb_001529_070--Hb_002081_170 Hb_004102_030 Hb_004102_030 Hb_001529_070--Hb_004102_030 Hb_007386_010 Hb_007386_010 Hb_001529_070--Hb_007386_010 Hb_032974_010 Hb_032974_010 Hb_001529_070--Hb_032974_010 Hb_000123_200--Hb_002099_010 Hb_000123_200--Hb_007416_040 Hb_000123_200--Hb_011349_010 Hb_000123_200--Hb_156554_010 Hb_021906_010--Hb_007386_010 Hb_002259_140 Hb_002259_140 Hb_021906_010--Hb_002259_140 Hb_021906_010--Hb_002099_010 Hb_004200_030 Hb_004200_030 Hb_021906_010--Hb_004200_030 Hb_004097_040 Hb_004097_040 Hb_021906_010--Hb_004097_040 Hb_000956_140 Hb_000956_140 Hb_141408_010--Hb_000956_140 Hb_137268_010 Hb_137268_010 Hb_141408_010--Hb_137268_010 Hb_000083_190 Hb_000083_190 Hb_141408_010--Hb_000083_190 Hb_052600_010 Hb_052600_010 Hb_141408_010--Hb_052600_010 Hb_001241_090 Hb_001241_090 Hb_141408_010--Hb_001241_090 Hb_140618_010 Hb_140618_010 Hb_141408_010--Hb_140618_010 Hb_002099_010--Hb_007386_010 Hb_002099_010--Hb_002259_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00683673 0.0482231 0.174995 0.104951 0 0.0152419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61657 0.93686 0 0.00390847 0.0421807

CAGE analysis