Hb_000083_190

Information

Type -
Description -
Location Contig83: 281155-282407
Sequence    

Annotation

kegg
ID brp:103831464
description protein NRT1/ PTR FAMILY 2.13-like
nr
ID CCN27376.1
description low affinity nitrate transporter, partial [Triticum aestivum]
swissprot
ID -
description -
trembl
ID L0R344
description Low affinity nitrate transporter (Fragment) OS=Triticum aestivum GN=TaNPF6.1 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_190 0.0 - - low affinity nitrate transporter, partial [Triticum aestivum]
2 Hb_137268_010 0.0322001785 - - -
3 Hb_000956_140 0.0654521383 - - -
4 Hb_052600_010 0.1387056741 - - -
5 Hb_001241_090 0.138824526 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
6 Hb_140618_010 0.1388564307 - - -
7 Hb_005396_140 0.1413265595 - - -
8 Hb_001105_080 0.1470353745 - - -
9 Hb_141408_010 0.1644598198 - - PREDICTED: uncharacterized protein LOC105631382 [Jatropha curcas]
10 Hb_001534_020 0.1863683331 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005834_030 0.1944627259 - - -
12 Hb_003675_010 0.2029382068 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
13 Hb_000270_820 0.2255168444 - - -
14 Hb_135585_010 0.249662438 - - -
15 Hb_000284_070 0.2712964515 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
16 Hb_106029_010 0.2754293569 - - Transcription factor ICE1, putative [Ricinus communis]
17 Hb_000510_380 0.2758835464 - - -
18 Hb_000482_130 0.2758882781 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
19 Hb_012543_020 0.2758924951 - - -
20 Hb_185616_010 0.2758992592 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000083_190 Hb_000083_190 Hb_137268_010 Hb_137268_010 Hb_000083_190--Hb_137268_010 Hb_000956_140 Hb_000956_140 Hb_000083_190--Hb_000956_140 Hb_052600_010 Hb_052600_010 Hb_000083_190--Hb_052600_010 Hb_001241_090 Hb_001241_090 Hb_000083_190--Hb_001241_090 Hb_140618_010 Hb_140618_010 Hb_000083_190--Hb_140618_010 Hb_005396_140 Hb_005396_140 Hb_000083_190--Hb_005396_140 Hb_137268_010--Hb_000956_140 Hb_137268_010--Hb_052600_010 Hb_137268_010--Hb_001241_090 Hb_137268_010--Hb_140618_010 Hb_137268_010--Hb_005396_140 Hb_000956_140--Hb_052600_010 Hb_000956_140--Hb_001241_090 Hb_000956_140--Hb_140618_010 Hb_000956_140--Hb_005396_140 Hb_052600_010--Hb_001241_090 Hb_052600_010--Hb_140618_010 Hb_052600_010--Hb_005396_140 Hb_001105_080 Hb_001105_080 Hb_052600_010--Hb_001105_080 Hb_005834_030 Hb_005834_030 Hb_052600_010--Hb_005834_030 Hb_003675_010 Hb_003675_010 Hb_052600_010--Hb_003675_010 Hb_001241_090--Hb_140618_010 Hb_001241_090--Hb_005396_140 Hb_001241_090--Hb_001105_080 Hb_001241_090--Hb_005834_030 Hb_001241_090--Hb_003675_010 Hb_140618_010--Hb_005396_140 Hb_140618_010--Hb_001105_080 Hb_140618_010--Hb_005834_030 Hb_140618_010--Hb_003675_010 Hb_005396_140--Hb_001105_080 Hb_005396_140--Hb_005834_030 Hb_005396_140--Hb_003675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.487668 0.0852287 0 0 0

CAGE analysis