Hb_004097_040

Information

Type -
Description -
Location Contig4097: 52410-59504
Sequence    

Annotation

kegg
ID rcu:RCOM_1382380
description aspartyl-tRNA synthetase, putative (EC:6.1.1.12)
nr
ID XP_012072776.1
description PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
swissprot
ID B2J116
description Aspartate--tRNA(Asp/Asn) ligase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=aspS PE=3 SV=1
trembl
ID A0A067KNA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06970 PE=3 SV=1
Gene Ontology
ID GO:0005737
description aspartate--trna mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004097_040 0.0 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
2 Hb_006376_010 0.1521603295 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
3 Hb_002259_140 0.1683427288 - - -
4 Hb_000136_160 0.1694976775 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_021906_010 0.170957034 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
6 Hb_044555_010 0.1740730455 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
7 Hb_007386_010 0.1840140026 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_004200_030 0.1918734793 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
9 Hb_002094_040 0.2146909988 - - Organic cation transporter protein [Aegilops tauschii]
10 Hb_002081_170 0.2209660833 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
11 Hb_000205_200 0.2210287533 - - -
12 Hb_005714_050 0.242482863 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
13 Hb_186158_010 0.2547430794 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000175_580 0.2619419047 transcription factor, desease resistance TF Family: C3H, Gene Name: zf-CCCH hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
15 Hb_000414_150 0.2685606348 - - mta/sah nucleosidase, putative [Ricinus communis]
16 Hb_004241_010 0.2712219544 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
17 Hb_032974_010 0.2733568051 - - -
18 Hb_002099_010 0.2803240061 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
19 Hb_117092_010 0.2850154357 - - acyl-CoA oxidase, putative [Ricinus communis]
20 Hb_008215_030 0.2882605941 - - hypothetical protein 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004097_040 Hb_004097_040 Hb_006376_010 Hb_006376_010 Hb_004097_040--Hb_006376_010 Hb_002259_140 Hb_002259_140 Hb_004097_040--Hb_002259_140 Hb_000136_160 Hb_000136_160 Hb_004097_040--Hb_000136_160 Hb_021906_010 Hb_021906_010 Hb_004097_040--Hb_021906_010 Hb_044555_010 Hb_044555_010 Hb_004097_040--Hb_044555_010 Hb_007386_010 Hb_007386_010 Hb_004097_040--Hb_007386_010 Hb_006376_010--Hb_000136_160 Hb_002094_040 Hb_002094_040 Hb_006376_010--Hb_002094_040 Hb_000205_200 Hb_000205_200 Hb_006376_010--Hb_000205_200 Hb_000414_150 Hb_000414_150 Hb_006376_010--Hb_000414_150 Hb_006376_010--Hb_044555_010 Hb_002259_140--Hb_021906_010 Hb_004200_030 Hb_004200_030 Hb_002259_140--Hb_004200_030 Hb_002259_140--Hb_007386_010 Hb_001911_070 Hb_001911_070 Hb_002259_140--Hb_001911_070 Hb_004241_010 Hb_004241_010 Hb_002259_140--Hb_004241_010 Hb_000136_160--Hb_000205_200 Hb_000136_160--Hb_044555_010 Hb_000136_160--Hb_002094_040 Hb_000136_160--Hb_004200_030 Hb_021906_010--Hb_007386_010 Hb_002099_010 Hb_002099_010 Hb_021906_010--Hb_002099_010 Hb_021906_010--Hb_004200_030 Hb_000175_580 Hb_000175_580 Hb_021906_010--Hb_000175_580 Hb_044555_010--Hb_004200_030 Hb_002081_170 Hb_002081_170 Hb_044555_010--Hb_002081_170 Hb_044555_010--Hb_007386_010 Hb_001979_030 Hb_001979_030 Hb_044555_010--Hb_001979_030 Hb_007386_010--Hb_004200_030 Hb_007386_010--Hb_002099_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0294428 0.15991 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383602 0.348228 0 0.00926049 0

CAGE analysis