Hb_001979_030

Information

Type -
Description -
Location Contig1979: 24267-24812
Sequence    

Annotation

kegg
ID pop:POPTR_0378s00210g
description hypothetical protein
nr
ID XP_006373797.1
description hypothetical protein POPTR_0016s06130g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FN19
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06130g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001979_030 0.0 - - hypothetical protein POPTR_0016s06130g [Populus trichocarpa]
2 Hb_006120_090 0.1342395369 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
3 Hb_000205_200 0.2365093 - - -
4 Hb_044555_010 0.2407531341 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_003996_030 0.2765173719 - - -
6 Hb_000329_260 0.2767474873 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]
7 Hb_001864_090 0.2885198317 - - -
8 Hb_003502_100 0.293593385 - - -
9 Hb_001922_180 0.2996072261 - - hevamine-A precursor, putative [Ricinus communis]
10 Hb_007553_010 0.3012283266 - - -
11 Hb_000174_010 0.3012955228 - - PREDICTED: uncharacterized protein LOC103444904 [Malus domestica]
12 Hb_000005_400 0.3055359335 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
13 Hb_000136_160 0.3090188468 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_000896_110 0.3090511235 - - -
15 Hb_078804_010 0.3100734681 - - kinase, putative [Ricinus communis]
16 Hb_124996_010 0.3102279952 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
17 Hb_002081_170 0.3153286753 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
18 Hb_092233_010 0.3191303736 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
19 Hb_001288_030 0.3198894185 - - -
20 Hb_004097_040 0.3219257228 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001979_030 Hb_001979_030 Hb_006120_090 Hb_006120_090 Hb_001979_030--Hb_006120_090 Hb_000205_200 Hb_000205_200 Hb_001979_030--Hb_000205_200 Hb_044555_010 Hb_044555_010 Hb_001979_030--Hb_044555_010 Hb_003996_030 Hb_003996_030 Hb_001979_030--Hb_003996_030 Hb_000329_260 Hb_000329_260 Hb_001979_030--Hb_000329_260 Hb_001864_090 Hb_001864_090 Hb_001979_030--Hb_001864_090 Hb_006120_090--Hb_044555_010 Hb_003502_100 Hb_003502_100 Hb_006120_090--Hb_003502_100 Hb_001288_030 Hb_001288_030 Hb_006120_090--Hb_001288_030 Hb_000174_010 Hb_000174_010 Hb_006120_090--Hb_000174_010 Hb_004128_040 Hb_004128_040 Hb_006120_090--Hb_004128_040 Hb_000136_160 Hb_000136_160 Hb_000205_200--Hb_000136_160 Hb_117092_010 Hb_117092_010 Hb_000205_200--Hb_117092_010 Hb_006376_010 Hb_006376_010 Hb_000205_200--Hb_006376_010 Hb_004097_040 Hb_004097_040 Hb_000205_200--Hb_004097_040 Hb_092233_010 Hb_092233_010 Hb_000205_200--Hb_092233_010 Hb_044555_010--Hb_004097_040 Hb_004200_030 Hb_004200_030 Hb_044555_010--Hb_004200_030 Hb_002081_170 Hb_002081_170 Hb_044555_010--Hb_002081_170 Hb_007386_010 Hb_007386_010 Hb_044555_010--Hb_007386_010 Hb_044555_010--Hb_000136_160 Hb_003996_030--Hb_001864_090 Hb_004158_100 Hb_004158_100 Hb_003996_030--Hb_004158_100 Hb_000946_160 Hb_000946_160 Hb_003996_030--Hb_000946_160 Hb_015941_050 Hb_015941_050 Hb_003996_030--Hb_015941_050 Hb_001277_060 Hb_001277_060 Hb_003996_030--Hb_001277_060 Hb_033870_010 Hb_033870_010 Hb_000329_260--Hb_033870_010 Hb_001417_080 Hb_001417_080 Hb_000329_260--Hb_001417_080 Hb_000329_260--Hb_001864_090 Hb_000329_260--Hb_000136_160 Hb_000032_050 Hb_000032_050 Hb_000329_260--Hb_000032_050 Hb_001864_090--Hb_000946_160 Hb_001922_180 Hb_001922_180 Hb_001864_090--Hb_001922_180 Hb_005489_010 Hb_005489_010 Hb_001864_090--Hb_005489_010 Hb_003206_100 Hb_003206_100 Hb_001864_090--Hb_003206_100 Hb_002025_210 Hb_002025_210 Hb_001864_090--Hb_002025_210 Hb_021888_040 Hb_021888_040 Hb_001864_090--Hb_021888_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.348574 0 0.147613 5.12787 0.178849 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.70906 2.92449 0 1.21043 0

CAGE analysis