Hb_002025_210

Information

Type -
Description -
Location Contig2025: 139087-140312
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20583: 138917-139671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_210 0.0 - - -
2 Hb_005489_010 0.1563330539 - - hypothetical protein POPTR_0011s11420g [Populus trichocarpa]
3 Hb_002344_120 0.172311208 - - -
4 Hb_000994_110 0.1989047782 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000665_110 0.2007878193 - - Ribosomal protein S11-beta [Theobroma cacao]
6 Hb_013492_010 0.2096677693 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
7 Hb_150766_020 0.2219878147 - - hypothetical protein VITISV_030841 [Vitis vinifera]
8 Hb_001233_020 0.223746888 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
9 Hb_000243_040 0.2315485648 - - -
10 Hb_000157_080 0.2365976773 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
11 Hb_182964_010 0.2367104883 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
12 Hb_163599_010 0.2382203723 - - hypothetical protein RCOM_1579620 [Ricinus communis]
13 Hb_006995_040 0.2415264473 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
14 Hb_007545_050 0.2428165769 - - -
15 Hb_001220_010 0.249543594 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
16 Hb_004669_030 0.2496355848 - - -
17 Hb_000562_060 0.2498052973 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
18 Hb_014834_140 0.2509005705 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
19 Hb_002168_010 0.258890365 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
20 Hb_002228_100 0.261451983 - - calcineurin-like phosphoesterase [Manihot esculenta]

Gene co-expression network

sample Hb_002025_210 Hb_002025_210 Hb_005489_010 Hb_005489_010 Hb_002025_210--Hb_005489_010 Hb_002344_120 Hb_002344_120 Hb_002025_210--Hb_002344_120 Hb_000994_110 Hb_000994_110 Hb_002025_210--Hb_000994_110 Hb_000665_110 Hb_000665_110 Hb_002025_210--Hb_000665_110 Hb_013492_010 Hb_013492_010 Hb_002025_210--Hb_013492_010 Hb_150766_020 Hb_150766_020 Hb_002025_210--Hb_150766_020 Hb_005489_010--Hb_002344_120 Hb_005489_010--Hb_000665_110 Hb_000562_060 Hb_000562_060 Hb_005489_010--Hb_000562_060 Hb_005489_010--Hb_150766_020 Hb_001233_020 Hb_001233_020 Hb_005489_010--Hb_001233_020 Hb_020035_010 Hb_020035_010 Hb_002344_120--Hb_020035_010 Hb_009346_040 Hb_009346_040 Hb_002344_120--Hb_009346_040 Hb_002344_120--Hb_000665_110 Hb_001017_060 Hb_001017_060 Hb_002344_120--Hb_001017_060 Hb_007545_050 Hb_007545_050 Hb_000994_110--Hb_007545_050 Hb_182964_010 Hb_182964_010 Hb_000994_110--Hb_182964_010 Hb_006995_040 Hb_006995_040 Hb_000994_110--Hb_006995_040 Hb_014834_140 Hb_014834_140 Hb_000994_110--Hb_014834_140 Hb_000994_110--Hb_001233_020 Hb_005367_010 Hb_005367_010 Hb_000994_110--Hb_005367_010 Hb_000665_110--Hb_000562_060 Hb_000181_380 Hb_000181_380 Hb_000665_110--Hb_000181_380 Hb_000665_110--Hb_001233_020 Hb_001220_010 Hb_001220_010 Hb_000665_110--Hb_001220_010 Hb_082407_010 Hb_082407_010 Hb_013492_010--Hb_082407_010 Hb_163599_010 Hb_163599_010 Hb_013492_010--Hb_163599_010 Hb_003405_060 Hb_003405_060 Hb_013492_010--Hb_003405_060 Hb_001405_130 Hb_001405_130 Hb_013492_010--Hb_001405_130 Hb_008442_010 Hb_008442_010 Hb_013492_010--Hb_008442_010 Hb_013492_010--Hb_014834_140 Hb_000157_080 Hb_000157_080 Hb_150766_020--Hb_000157_080 Hb_179812_010 Hb_179812_010 Hb_150766_020--Hb_179812_010 Hb_004195_230 Hb_004195_230 Hb_150766_020--Hb_004195_230 Hb_150766_020--Hb_000994_110 Hb_009393_190 Hb_009393_190 Hb_150766_020--Hb_009393_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0480165 0.0386729 0.0899699 1.27669 0.221593 0.743165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14263 1.03635 0 0.140939 0

CAGE analysis