Hb_009346_040

Information

Type -
Description -
Location Contig9346: 42140-48785
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009346_040 0.0 - - -
2 Hb_007532_040 0.1955182168 - - -
3 Hb_001017_060 0.1967784018 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
4 Hb_008221_110 0.1972489674 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
5 Hb_175976_010 0.2063178777 - - -
6 Hb_020035_020 0.2218711488 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
7 Hb_011644_010 0.2250579666 - - PREDICTED: probable choline-phosphate cytidylyltransferase [Elaeis guineensis]
8 Hb_006995_040 0.2279847118 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
9 Hb_001296_030 0.2304831565 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
10 Hb_001310_070 0.2317056337 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
11 Hb_010368_030 0.2323937003 - - BnaA07g35570D [Brassica napus]
12 Hb_012305_120 0.2327849032 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
13 Hb_007534_020 0.233607491 - - -
14 Hb_014834_040 0.2355763499 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
15 Hb_042710_010 0.2360480136 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
16 Hb_002344_120 0.2415271741 - - -
17 Hb_000493_010 0.2425731734 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
18 Hb_020035_010 0.244925791 - - PREDICTED: DNA-directed RNA polymerase V subunit 1-like isoform X2 [Glycine max]
19 Hb_000003_350 0.253298006 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
20 Hb_135940_010 0.2533510762 - - hypothetical protein JCGZ_18294 [Jatropha curcas]

Gene co-expression network

sample Hb_009346_040 Hb_009346_040 Hb_007532_040 Hb_007532_040 Hb_009346_040--Hb_007532_040 Hb_001017_060 Hb_001017_060 Hb_009346_040--Hb_001017_060 Hb_008221_110 Hb_008221_110 Hb_009346_040--Hb_008221_110 Hb_175976_010 Hb_175976_010 Hb_009346_040--Hb_175976_010 Hb_020035_020 Hb_020035_020 Hb_009346_040--Hb_020035_020 Hb_011644_010 Hb_011644_010 Hb_009346_040--Hb_011644_010 Hb_000493_010 Hb_000493_010 Hb_007532_040--Hb_000493_010 Hb_012305_120 Hb_012305_120 Hb_007532_040--Hb_012305_120 Hb_001296_030 Hb_001296_030 Hb_007532_040--Hb_001296_030 Hb_007532_040--Hb_020035_020 Hb_008841_010 Hb_008841_010 Hb_007532_040--Hb_008841_010 Hb_001017_060--Hb_008221_110 Hb_001017_060--Hb_175976_010 Hb_007534_020 Hb_007534_020 Hb_001017_060--Hb_007534_020 Hb_000258_030 Hb_000258_030 Hb_001017_060--Hb_000258_030 Hb_014834_040 Hb_014834_040 Hb_001017_060--Hb_014834_040 Hb_001017_060--Hb_011644_010 Hb_008221_110--Hb_175976_010 Hb_000127_090 Hb_000127_090 Hb_008221_110--Hb_000127_090 Hb_001310_070 Hb_001310_070 Hb_008221_110--Hb_001310_070 Hb_010368_030 Hb_010368_030 Hb_008221_110--Hb_010368_030 Hb_008221_110--Hb_007534_020 Hb_175976_010--Hb_010368_030 Hb_175976_010--Hb_007534_020 Hb_000120_190 Hb_000120_190 Hb_175976_010--Hb_000120_190 Hb_175976_010--Hb_000127_090 Hb_000656_340 Hb_000656_340 Hb_020035_020--Hb_000656_340 Hb_042710_010 Hb_042710_010 Hb_020035_020--Hb_042710_010 Hb_006995_040 Hb_006995_040 Hb_020035_020--Hb_006995_040 Hb_001610_130 Hb_001610_130 Hb_020035_020--Hb_001610_130 Hb_000419_130 Hb_000419_130 Hb_020035_020--Hb_000419_130 Hb_020035_020--Hb_000493_010 Hb_000097_010 Hb_000097_010 Hb_011644_010--Hb_000097_010 Hb_135940_010 Hb_135940_010 Hb_011644_010--Hb_135940_010 Hb_029142_070 Hb_029142_070 Hb_011644_010--Hb_029142_070 Hb_011644_010--Hb_000656_340 Hb_011644_010--Hb_014834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.78661 0.407062 4.35958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08516 2.60738 0.783182 0.92013 0

CAGE analysis