Hb_007532_040

Information

Type -
Description -
Location Contig7532: 39184-40258
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007532_040 0.0 - - -
2 Hb_000493_010 0.1634986768 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
3 Hb_012305_120 0.1795908579 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
4 Hb_001296_030 0.182939784 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
5 Hb_009346_040 0.1955182168 - - -
6 Hb_020035_020 0.1978736151 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
7 Hb_008841_010 0.2000553561 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
8 Hb_001310_070 0.2074023388 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
9 Hb_175976_010 0.2140047588 - - -
10 Hb_042710_010 0.2148733565 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
11 Hb_008221_110 0.215646817 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
12 Hb_003602_050 0.2240903923 - - zinc binding dehydrogenase, putative [Ricinus communis]
13 Hb_000847_140 0.2263137228 - - -
14 Hb_000419_130 0.2323744068 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
15 Hb_000648_030 0.2374408747 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
16 Hb_001057_050 0.2391258807 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
17 Hb_002671_080 0.2412508176 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 [Jatropha curcas]
18 Hb_007520_060 0.2418660778 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
19 Hb_006995_040 0.242117463 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
20 Hb_007594_090 0.242382297 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]

Gene co-expression network

sample Hb_007532_040 Hb_007532_040 Hb_000493_010 Hb_000493_010 Hb_007532_040--Hb_000493_010 Hb_012305_120 Hb_012305_120 Hb_007532_040--Hb_012305_120 Hb_001296_030 Hb_001296_030 Hb_007532_040--Hb_001296_030 Hb_009346_040 Hb_009346_040 Hb_007532_040--Hb_009346_040 Hb_020035_020 Hb_020035_020 Hb_007532_040--Hb_020035_020 Hb_008841_010 Hb_008841_010 Hb_007532_040--Hb_008841_010 Hb_000648_030 Hb_000648_030 Hb_000493_010--Hb_000648_030 Hb_042710_010 Hb_042710_010 Hb_000493_010--Hb_042710_010 Hb_000493_010--Hb_001296_030 Hb_000672_120 Hb_000672_120 Hb_000493_010--Hb_000672_120 Hb_000419_130 Hb_000419_130 Hb_000493_010--Hb_000419_130 Hb_007317_060 Hb_007317_060 Hb_000493_010--Hb_007317_060 Hb_000847_140 Hb_000847_140 Hb_012305_120--Hb_000847_140 Hb_015978_070 Hb_015978_070 Hb_012305_120--Hb_015978_070 Hb_000345_430 Hb_000345_430 Hb_012305_120--Hb_000345_430 Hb_001623_430 Hb_001623_430 Hb_012305_120--Hb_001623_430 Hb_007520_060 Hb_007520_060 Hb_012305_120--Hb_007520_060 Hb_009659_020 Hb_009659_020 Hb_012305_120--Hb_009659_020 Hb_001296_030--Hb_042710_010 Hb_001296_030--Hb_008841_010 Hb_001296_030--Hb_000419_130 Hb_075359_010 Hb_075359_010 Hb_001296_030--Hb_075359_010 Hb_000025_240 Hb_000025_240 Hb_001296_030--Hb_000025_240 Hb_001017_060 Hb_001017_060 Hb_009346_040--Hb_001017_060 Hb_008221_110 Hb_008221_110 Hb_009346_040--Hb_008221_110 Hb_175976_010 Hb_175976_010 Hb_009346_040--Hb_175976_010 Hb_009346_040--Hb_020035_020 Hb_011644_010 Hb_011644_010 Hb_009346_040--Hb_011644_010 Hb_000656_340 Hb_000656_340 Hb_020035_020--Hb_000656_340 Hb_020035_020--Hb_042710_010 Hb_006995_040 Hb_006995_040 Hb_020035_020--Hb_006995_040 Hb_001610_130 Hb_001610_130 Hb_020035_020--Hb_001610_130 Hb_020035_020--Hb_000419_130 Hb_020035_020--Hb_000493_010 Hb_002025_300 Hb_002025_300 Hb_008841_010--Hb_002025_300 Hb_008841_010--Hb_042710_010 Hb_007594_090 Hb_007594_090 Hb_008841_010--Hb_007594_090 Hb_008841_010--Hb_000672_120 Hb_008841_010--Hb_000493_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144887 0.297916 0 1.45384 0.137497 7.84202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.59202 4.61781 2.3568 0.877432 0.427258

CAGE analysis