Hb_000157_080

Information

Type transcription factor
Description TF Family: GNAT
Location Contig157: 70667-71441
Sequence    

Annotation

kegg
ID rcu:RCOM_1465100
description N-acetyltransferase, putative
nr
ID XP_012080496.1
description PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
swissprot
ID Q1XDU5
description Uncharacterized N-acetyltransferase ycf52 OS=Pyropia yezoensis GN=ycf52 PE=3 SV=1
trembl
ID A0A067KGN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11806 PE=4 SV=1
Gene Ontology
ID GO:0009507
description uncharacterized n-acetyltransferase ycf52

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000157_080 0.0 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
2 Hb_150766_020 0.1634430776 - - hypothetical protein VITISV_030841 [Vitis vinifera]
3 Hb_009393_190 0.1711604902 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
4 Hb_000994_110 0.1900588732 - - conserved hypothetical protein [Ricinus communis]
5 Hb_179812_010 0.2008513275 - - TdcA1-ORF1-ORF2 [Daucus carota]
6 Hb_000243_040 0.2240648667 - - -
7 Hb_000136_180 0.2285774464 - - ribosomal protein S28, putative [Ricinus communis]
8 Hb_000028_060 0.2355240803 - - -
9 Hb_002073_010 0.2364156874 - - -
10 Hb_002025_210 0.2365976773 - - -
11 Hb_014834_040 0.2420651715 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
12 Hb_002687_080 0.2426693881 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
13 Hb_090158_010 0.2434935923 - - hypothetical protein RCOM_1968400 [Ricinus communis]
14 Hb_000574_280 0.2451498257 - - hypothetical protein POPTR_0006s28780g [Populus trichocarpa]
15 Hb_004223_220 0.2459537399 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
16 Hb_001233_020 0.2479494589 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
17 Hb_005367_010 0.2479606672 - - -
18 Hb_184570_010 0.2491180895 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
19 Hb_182964_010 0.2492182084 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
20 Hb_066913_010 0.2516943204 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]

Gene co-expression network

sample Hb_000157_080 Hb_000157_080 Hb_150766_020 Hb_150766_020 Hb_000157_080--Hb_150766_020 Hb_009393_190 Hb_009393_190 Hb_000157_080--Hb_009393_190 Hb_000994_110 Hb_000994_110 Hb_000157_080--Hb_000994_110 Hb_179812_010 Hb_179812_010 Hb_000157_080--Hb_179812_010 Hb_000243_040 Hb_000243_040 Hb_000157_080--Hb_000243_040 Hb_000136_180 Hb_000136_180 Hb_000157_080--Hb_000136_180 Hb_150766_020--Hb_179812_010 Hb_004195_230 Hb_004195_230 Hb_150766_020--Hb_004195_230 Hb_002025_210 Hb_002025_210 Hb_150766_020--Hb_002025_210 Hb_150766_020--Hb_000994_110 Hb_150766_020--Hb_009393_190 Hb_009615_020 Hb_009615_020 Hb_009393_190--Hb_009615_020 Hb_000574_280 Hb_000574_280 Hb_009393_190--Hb_000574_280 Hb_100743_010 Hb_100743_010 Hb_009393_190--Hb_100743_010 Hb_001437_090 Hb_001437_090 Hb_009393_190--Hb_001437_090 Hb_000959_310 Hb_000959_310 Hb_009393_190--Hb_000959_310 Hb_007545_050 Hb_007545_050 Hb_000994_110--Hb_007545_050 Hb_182964_010 Hb_182964_010 Hb_000994_110--Hb_182964_010 Hb_006995_040 Hb_006995_040 Hb_000994_110--Hb_006995_040 Hb_014834_140 Hb_014834_140 Hb_000994_110--Hb_014834_140 Hb_001233_020 Hb_001233_020 Hb_000994_110--Hb_001233_020 Hb_005367_010 Hb_005367_010 Hb_000994_110--Hb_005367_010 Hb_005542_090 Hb_005542_090 Hb_179812_010--Hb_005542_090 Hb_179812_010--Hb_004195_230 Hb_002388_010 Hb_002388_010 Hb_179812_010--Hb_002388_010 Hb_002687_080 Hb_002687_080 Hb_179812_010--Hb_002687_080 Hb_178620_010 Hb_178620_010 Hb_179812_010--Hb_178620_010 Hb_000243_040--Hb_000994_110 Hb_078185_010 Hb_078185_010 Hb_000243_040--Hb_078185_010 Hb_000584_020 Hb_000584_020 Hb_000243_040--Hb_000584_020 Hb_000352_290 Hb_000352_290 Hb_000243_040--Hb_000352_290 Hb_000243_040--Hb_182964_010 Hb_000010_210 Hb_000010_210 Hb_000243_040--Hb_000010_210 Hb_007188_020 Hb_007188_020 Hb_000136_180--Hb_007188_020 Hb_000136_180--Hb_002687_080 Hb_112047_010 Hb_112047_010 Hb_000136_180--Hb_112047_010 Hb_000015_070 Hb_000015_070 Hb_000136_180--Hb_000015_070 Hb_076875_020 Hb_076875_020 Hb_000136_180--Hb_076875_020 Hb_001623_290 Hb_001623_290 Hb_000136_180--Hb_001623_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.094509 0.0402002 0.261921 0.659343 0.183975 0.732875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.439888 0.691345 0 0.391243 0

CAGE analysis