Hb_009393_190

Information

Type -
Description -
Location Contig9393: 139981-141723
Sequence    

Annotation

kegg
ID tcc:TCM_037426
description RING/U-box superfamily protein
nr
ID XP_012077546.1
description PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
swissprot
ID Q8RXD3
description E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2 PE=1 SV=1
trembl
ID A0A067KG53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07569 PE=4 SV=1
Gene Ontology
ID GO:0044424
description e3 ubiquitin-protein ligase aip2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63060: 139258-140975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_190 0.0 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
2 Hb_000157_080 0.1711604902 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
3 Hb_009615_020 0.2307160326 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7-like [Jatropha curcas]
4 Hb_000574_280 0.2433704408 - - hypothetical protein POPTR_0006s28780g [Populus trichocarpa]
5 Hb_100743_010 0.247690032 - - hypothetical protein JCGZ_17104 [Jatropha curcas]
6 Hb_001437_090 0.2486357371 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit [Jatropha curcas]
7 Hb_000959_310 0.2515975833 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
8 Hb_000352_290 0.2543557498 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
9 Hb_150766_020 0.2549855474 - - hypothetical protein VITISV_030841 [Vitis vinifera]
10 Hb_004374_180 0.2587063235 - - GMP synthase, putative [Ricinus communis]
11 Hb_000243_040 0.2603817727 - - -
12 Hb_000108_100 0.2624309867 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X2 [Jatropha curcas]
13 Hb_000028_060 0.2678093782 - - -
14 Hb_001842_050 0.2687942562 - - PREDICTED: protein BUD31 homolog 1-like [Jatropha curcas]
15 Hb_001019_080 0.2714427983 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
16 Hb_003750_070 0.2714709619 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
17 Hb_005000_330 0.2717652047 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000994_110 0.2718016018 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000123_270 0.2728991497 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001021_180 0.2733658204 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_009393_190 Hb_009393_190 Hb_000157_080 Hb_000157_080 Hb_009393_190--Hb_000157_080 Hb_009615_020 Hb_009615_020 Hb_009393_190--Hb_009615_020 Hb_000574_280 Hb_000574_280 Hb_009393_190--Hb_000574_280 Hb_100743_010 Hb_100743_010 Hb_009393_190--Hb_100743_010 Hb_001437_090 Hb_001437_090 Hb_009393_190--Hb_001437_090 Hb_000959_310 Hb_000959_310 Hb_009393_190--Hb_000959_310 Hb_150766_020 Hb_150766_020 Hb_000157_080--Hb_150766_020 Hb_000994_110 Hb_000994_110 Hb_000157_080--Hb_000994_110 Hb_179812_010 Hb_179812_010 Hb_000157_080--Hb_179812_010 Hb_000243_040 Hb_000243_040 Hb_000157_080--Hb_000243_040 Hb_000136_180 Hb_000136_180 Hb_000157_080--Hb_000136_180 Hb_001140_070 Hb_001140_070 Hb_009615_020--Hb_001140_070 Hb_006816_260 Hb_006816_260 Hb_009615_020--Hb_006816_260 Hb_000562_030 Hb_000562_030 Hb_009615_020--Hb_000562_030 Hb_000023_160 Hb_000023_160 Hb_009615_020--Hb_000023_160 Hb_000329_270 Hb_000329_270 Hb_009615_020--Hb_000329_270 Hb_000916_070 Hb_000916_070 Hb_009615_020--Hb_000916_070 Hb_000574_280--Hb_000023_160 Hb_000574_280--Hb_000157_080 Hb_002232_470 Hb_002232_470 Hb_000574_280--Hb_002232_470 Hb_000108_100 Hb_000108_100 Hb_000574_280--Hb_000108_100 Hb_003925_030 Hb_003925_030 Hb_000574_280--Hb_003925_030 Hb_000184_210 Hb_000184_210 Hb_100743_010--Hb_000184_210 Hb_000352_290 Hb_000352_290 Hb_100743_010--Hb_000352_290 Hb_001842_050 Hb_001842_050 Hb_100743_010--Hb_001842_050 Hb_110390_010 Hb_110390_010 Hb_100743_010--Hb_110390_010 Hb_000123_270 Hb_000123_270 Hb_100743_010--Hb_000123_270 Hb_000948_200 Hb_000948_200 Hb_100743_010--Hb_000948_200 Hb_003938_210 Hb_003938_210 Hb_001437_090--Hb_003938_210 Hb_001437_090--Hb_009615_020 Hb_001437_090--Hb_001140_070 Hb_001437_090--Hb_000948_200 Hb_000868_050 Hb_000868_050 Hb_001437_090--Hb_000868_050 Hb_001799_110 Hb_001799_110 Hb_000959_310--Hb_001799_110 Hb_012120_030 Hb_012120_030 Hb_000959_310--Hb_012120_030 Hb_114336_030 Hb_114336_030 Hb_000959_310--Hb_114336_030 Hb_004931_080 Hb_004931_080 Hb_000959_310--Hb_004931_080 Hb_188209_010 Hb_188209_010 Hb_000959_310--Hb_188209_010 Hb_003750_070 Hb_003750_070 Hb_000959_310--Hb_003750_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0465224 0 0.179796 0.187122 0.0468398 0.155599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.216439 0.255128 0 0.10493 0

CAGE analysis