Hb_000184_210

Information

Type -
Description -
Location Contig184: 254148-255788
Sequence    

Annotation

kegg
ID rcu:RCOM_1277260
description RING-H2 finger protein ATL3J, putative
nr
ID XP_002533895.1
description RING-H2 finger protein ATL3J, putative [Ricinus communis]
swissprot
ID Q9SI09
description Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1
trembl
ID B9T6M6
description RING-H2 finger protein ATL3J, putative OS=Ricinus communis GN=RCOM_1277260 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable e3 ubiquitin-protein ligase xerico

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18007: 253894-255895 , PASA_asmbl_18008: 255084-255369 , PASA_asmbl_18009: 255478-255687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_210 0.0 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
2 Hb_032717_020 0.1602956179 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
3 Hb_000473_020 0.1758422161 - - expressed protein, putative [Ricinus communis]
4 Hb_001511_260 0.1831957283 - - tryptophan biosynthesis protein, putative [Ricinus communis]
5 Hb_009620_100 0.1914423029 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
6 Hb_000584_020 0.1933938389 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
7 Hb_048476_100 0.1937036437 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]
8 Hb_006028_020 0.1962614883 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
9 Hb_004195_080 0.1977506934 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
10 Hb_001431_080 0.199327074 - - 40S ribosomal protein S11, putative [Ricinus communis]
11 Hb_178227_010 0.2026552658 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
12 Hb_000352_290 0.2070830607 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
13 Hb_000803_200 0.2079743693 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
14 Hb_110390_010 0.2081135107 - - hypothetical protein JCGZ_19741 [Jatropha curcas]
15 Hb_000084_260 0.2093724426 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
16 Hb_007113_070 0.210009366 - - protein with unknown function [Ricinus communis]
17 Hb_000139_430 0.2126077287 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
18 Hb_000318_210 0.2154473365 - - PREDICTED: 40S ribosomal protein S12-like isoform X1 [Jatropha curcas]
19 Hb_119316_010 0.2154482967 - - tryptophan biosynthesis protein, putative [Ricinus communis]
20 Hb_004230_020 0.2169698455 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]

Gene co-expression network

sample Hb_000184_210 Hb_000184_210 Hb_032717_020 Hb_032717_020 Hb_000184_210--Hb_032717_020 Hb_000473_020 Hb_000473_020 Hb_000184_210--Hb_000473_020 Hb_001511_260 Hb_001511_260 Hb_000184_210--Hb_001511_260 Hb_009620_100 Hb_009620_100 Hb_000184_210--Hb_009620_100 Hb_000584_020 Hb_000584_020 Hb_000184_210--Hb_000584_020 Hb_048476_100 Hb_048476_100 Hb_000184_210--Hb_048476_100 Hb_032717_020--Hb_048476_100 Hb_002686_180 Hb_002686_180 Hb_032717_020--Hb_002686_180 Hb_000329_270 Hb_000329_270 Hb_032717_020--Hb_000329_270 Hb_003849_130 Hb_003849_130 Hb_032717_020--Hb_003849_130 Hb_000340_500 Hb_000340_500 Hb_032717_020--Hb_000340_500 Hb_003536_110 Hb_003536_110 Hb_000473_020--Hb_003536_110 Hb_005667_040 Hb_005667_040 Hb_000473_020--Hb_005667_040 Hb_005000_330 Hb_005000_330 Hb_000473_020--Hb_005000_330 Hb_004195_080 Hb_004195_080 Hb_000473_020--Hb_004195_080 Hb_026314_020 Hb_026314_020 Hb_000473_020--Hb_026314_020 Hb_000359_150 Hb_000359_150 Hb_000473_020--Hb_000359_150 Hb_000803_200 Hb_000803_200 Hb_001511_260--Hb_000803_200 Hb_006326_040 Hb_006326_040 Hb_001511_260--Hb_006326_040 Hb_000392_340 Hb_000392_340 Hb_001511_260--Hb_000392_340 Hb_000832_190 Hb_000832_190 Hb_001511_260--Hb_000832_190 Hb_001511_260--Hb_000359_150 Hb_002303_060 Hb_002303_060 Hb_001511_260--Hb_002303_060 Hb_000916_070 Hb_000916_070 Hb_009620_100--Hb_000916_070 Hb_000868_050 Hb_000868_050 Hb_009620_100--Hb_000868_050 Hb_000227_190 Hb_000227_190 Hb_009620_100--Hb_000227_190 Hb_051997_020 Hb_051997_020 Hb_009620_100--Hb_051997_020 Hb_026549_010 Hb_026549_010 Hb_009620_100--Hb_026549_010 Hb_001357_100 Hb_001357_100 Hb_000584_020--Hb_001357_100 Hb_178227_010 Hb_178227_010 Hb_000584_020--Hb_178227_010 Hb_000584_020--Hb_000473_020 Hb_001754_070 Hb_001754_070 Hb_000584_020--Hb_001754_070 Hb_000584_020--Hb_005667_040 Hb_000352_290 Hb_000352_290 Hb_000584_020--Hb_000352_290 Hb_048476_100--Hb_000329_270 Hb_048476_100--Hb_003849_130 Hb_048476_100--Hb_000803_200 Hb_055062_020 Hb_055062_020 Hb_048476_100--Hb_055062_020 Hb_002374_080 Hb_002374_080 Hb_048476_100--Hb_002374_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.691 6.1362 70.8933 76.4936 14.5862 37.6285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2645 99.4105 33.9209 8.99589 2.92549

CAGE analysis