Hb_000868_050

Information

Type -
Description -
Location Contig868: 114730-118164
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13750g
description hypothetical protein
nr
ID BAF02935.1
description RAD51 homolog [Populus nigra]
swissprot
ID P94102
description DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana GN=RAD51 PE=1 SV=1
trembl
ID Q0PCG3
description RAD51 homolog OS=Populus nigra GN=PnRad51 PE=2 SV=1
Gene Ontology
ID GO:0005634
description dna repair protein rad51 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61042: 114678-115962 , PASA_asmbl_61043: 116159-118194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000868_050 0.0 - - RAD51 homolog [Populus nigra]
2 Hb_000916_070 0.1528682957 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
3 Hb_003001_090 0.1626886864 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
4 Hb_026549_010 0.1695705565 - - -
5 Hb_090158_010 0.1695785422 - - hypothetical protein RCOM_1968400 [Ricinus communis]
6 Hb_002490_010 0.1753159121 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
7 Hb_004195_230 0.1754213274 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000227_190 0.1757148268 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
9 Hb_009620_100 0.1808617487 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
10 Hb_010381_010 0.1810456578 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000172_510 0.1811549494 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
12 Hb_002960_150 0.1826891757 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
13 Hb_010368_050 0.1830738076 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
14 Hb_052805_010 0.1838186526 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
15 Hb_011282_060 0.1855411775 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
16 Hb_009615_020 0.1860944621 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7-like [Jatropha curcas]
17 Hb_001699_100 0.1864114034 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
18 Hb_010810_010 0.186684805 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
19 Hb_007017_080 0.1881506437 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
20 Hb_000684_260 0.1909820078 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000868_050 Hb_000868_050 Hb_000916_070 Hb_000916_070 Hb_000868_050--Hb_000916_070 Hb_003001_090 Hb_003001_090 Hb_000868_050--Hb_003001_090 Hb_026549_010 Hb_026549_010 Hb_000868_050--Hb_026549_010 Hb_090158_010 Hb_090158_010 Hb_000868_050--Hb_090158_010 Hb_002490_010 Hb_002490_010 Hb_000868_050--Hb_002490_010 Hb_004195_230 Hb_004195_230 Hb_000868_050--Hb_004195_230 Hb_002960_150 Hb_002960_150 Hb_000916_070--Hb_002960_150 Hb_000622_130 Hb_000622_130 Hb_000916_070--Hb_000622_130 Hb_067130_010 Hb_067130_010 Hb_000916_070--Hb_067130_010 Hb_124373_010 Hb_124373_010 Hb_000916_070--Hb_124373_010 Hb_010368_050 Hb_010368_050 Hb_000916_070--Hb_010368_050 Hb_000916_070--Hb_003001_090 Hb_007017_080 Hb_007017_080 Hb_003001_090--Hb_007017_080 Hb_001124_070 Hb_001124_070 Hb_003001_090--Hb_001124_070 Hb_003001_090--Hb_002960_150 Hb_010381_010 Hb_010381_010 Hb_003001_090--Hb_010381_010 Hb_000227_190 Hb_000227_190 Hb_003001_090--Hb_000227_190 Hb_002217_470 Hb_002217_470 Hb_026549_010--Hb_002217_470 Hb_016734_080 Hb_016734_080 Hb_026549_010--Hb_016734_080 Hb_001054_020 Hb_001054_020 Hb_026549_010--Hb_001054_020 Hb_000654_030 Hb_000654_030 Hb_026549_010--Hb_000654_030 Hb_000622_200 Hb_000622_200 Hb_026549_010--Hb_000622_200 Hb_075764_010 Hb_075764_010 Hb_090158_010--Hb_075764_010 Hb_099878_050 Hb_099878_050 Hb_090158_010--Hb_099878_050 Hb_085972_010 Hb_085972_010 Hb_090158_010--Hb_085972_010 Hb_088163_010 Hb_088163_010 Hb_090158_010--Hb_088163_010 Hb_146675_010 Hb_146675_010 Hb_090158_010--Hb_146675_010 Hb_129672_010 Hb_129672_010 Hb_090158_010--Hb_129672_010 Hb_000028_600 Hb_000028_600 Hb_002490_010--Hb_000028_600 Hb_003988_050 Hb_003988_050 Hb_002490_010--Hb_003988_050 Hb_002150_040 Hb_002150_040 Hb_002490_010--Hb_002150_040 Hb_010810_010 Hb_010810_010 Hb_002490_010--Hb_010810_010 Hb_000136_100 Hb_000136_100 Hb_002490_010--Hb_000136_100 Hb_001104_100 Hb_001104_100 Hb_002490_010--Hb_001104_100 Hb_066913_010 Hb_066913_010 Hb_004195_230--Hb_066913_010 Hb_179812_010 Hb_179812_010 Hb_004195_230--Hb_179812_010 Hb_004669_030 Hb_004669_030 Hb_004195_230--Hb_004669_030 Hb_000789_150 Hb_000789_150 Hb_004195_230--Hb_000789_150 Hb_002388_010 Hb_002388_010 Hb_004195_230--Hb_002388_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.42147 0.311183 2.41581 4.06242 1.31351 1.86248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52408 1.27859 1.02949 1.43014 0.163457

CAGE analysis