Hb_000352_290

Information

Type -
Description -
Location Contig352: 240266-242916
Sequence    

Annotation

kegg
ID vvi:100258782
description transcription initiation factor TFIID subunit 7
nr
ID XP_010651371.1
description PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
swissprot
ID B9DG24
description Transcription initiation factor TFIID subunit 7 OS=Arabidopsis thaliana GN=TAF7 PE=1 SV=1
trembl
ID B9GLF9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04340g PE=4 SV=2
Gene Ontology
ID GO:0005669
description transcription initiation factor tfiid subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_290 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
2 Hb_001754_070 0.1355227004 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
3 Hb_001842_050 0.1462915588 - - PREDICTED: protein BUD31 homolog 1-like [Jatropha curcas]
4 Hb_004125_110 0.1508549672 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
5 Hb_000584_020 0.1512544218 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
6 Hb_000084_260 0.1519010252 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
7 Hb_178227_010 0.1558500902 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
8 Hb_002716_090 0.1571231908 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
9 Hb_002900_160 0.1614431556 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
10 Hb_005667_040 0.1616743988 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
11 Hb_000243_040 0.1631027348 - - -
12 Hb_000363_320 0.1645140778 - - PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
13 Hb_001571_090 0.1681794636 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
14 Hb_003018_050 0.1694259831 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
15 Hb_002838_030 0.1698269151 - - 40S ribosomal protein S25A [Hevea brasiliensis]
16 Hb_003376_190 0.1699594577 - - syntaxin, putative [Ricinus communis]
17 Hb_001221_310 0.1712590447 - - sec61 gamma subunit, putative [Ricinus communis]
18 Hb_000000_170 0.1714138545 - - defender against cell death, putative [Ricinus communis]
19 Hb_000699_160 0.1715374222 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
20 Hb_000505_140 0.1734875353 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]

Gene co-expression network

sample Hb_000352_290 Hb_000352_290 Hb_001754_070 Hb_001754_070 Hb_000352_290--Hb_001754_070 Hb_001842_050 Hb_001842_050 Hb_000352_290--Hb_001842_050 Hb_004125_110 Hb_004125_110 Hb_000352_290--Hb_004125_110 Hb_000584_020 Hb_000584_020 Hb_000352_290--Hb_000584_020 Hb_000084_260 Hb_000084_260 Hb_000352_290--Hb_000084_260 Hb_178227_010 Hb_178227_010 Hb_000352_290--Hb_178227_010 Hb_140543_010 Hb_140543_010 Hb_001754_070--Hb_140543_010 Hb_130235_010 Hb_130235_010 Hb_001754_070--Hb_130235_010 Hb_005667_040 Hb_005667_040 Hb_001754_070--Hb_005667_040 Hb_001158_150 Hb_001158_150 Hb_001754_070--Hb_001158_150 Hb_001754_070--Hb_004125_110 Hb_000326_090 Hb_000326_090 Hb_001754_070--Hb_000326_090 Hb_004162_210 Hb_004162_210 Hb_001842_050--Hb_004162_210 Hb_001842_050--Hb_000084_260 Hb_006915_040 Hb_006915_040 Hb_001842_050--Hb_006915_040 Hb_001842_050--Hb_130235_010 Hb_000329_270 Hb_000329_270 Hb_001842_050--Hb_000329_270 Hb_003018_050 Hb_003018_050 Hb_004125_110--Hb_003018_050 Hb_003226_210 Hb_003226_210 Hb_004125_110--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_004125_110--Hb_001214_160 Hb_000997_120 Hb_000997_120 Hb_004125_110--Hb_000997_120 Hb_000134_070 Hb_000134_070 Hb_004125_110--Hb_000134_070 Hb_002660_030 Hb_002660_030 Hb_004125_110--Hb_002660_030 Hb_001357_100 Hb_001357_100 Hb_000584_020--Hb_001357_100 Hb_000584_020--Hb_178227_010 Hb_000473_020 Hb_000473_020 Hb_000584_020--Hb_000473_020 Hb_000584_020--Hb_001754_070 Hb_000584_020--Hb_005667_040 Hb_000084_260--Hb_003018_050 Hb_000084_260--Hb_004125_110 Hb_000107_300 Hb_000107_300 Hb_000084_260--Hb_000107_300 Hb_003376_190 Hb_003376_190 Hb_000084_260--Hb_003376_190 Hb_007113_070 Hb_007113_070 Hb_000084_260--Hb_007113_070 Hb_009486_020 Hb_009486_020 Hb_000084_260--Hb_009486_020 Hb_002900_160 Hb_002900_160 Hb_178227_010--Hb_002900_160 Hb_014783_010 Hb_014783_010 Hb_178227_010--Hb_014783_010 Hb_007044_130 Hb_007044_130 Hb_178227_010--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_178227_010--Hb_002783_270 Hb_009476_020 Hb_009476_020 Hb_178227_010--Hb_009476_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.741875 0.147117 1.61075 3.26312 1.64786 2.2661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.713 6.39872 1.41846 1.26288 0.120976

CAGE analysis