Hb_000084_260

Information

Type -
Description -
Location Contig84: 222602-228563
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22850g
description POPTRDRAFT_832046; hypothetical protein
nr
ID XP_012072977.1
description PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
swissprot
ID Q9LXK1
description Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana GN=RPA3A PE=2 SV=1
trembl
ID A0A067KMH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06761 PE=4 SV=1
Gene Ontology
ID GO:0005634
description replication protein a 14 kda subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60056: 222632-227445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_260 0.0 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
2 Hb_003018_050 0.0946039905 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
3 Hb_004125_110 0.1029519727 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
4 Hb_000107_300 0.1052498894 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
5 Hb_003376_190 0.108123763 - - syntaxin, putative [Ricinus communis]
6 Hb_007113_070 0.108849732 - - protein with unknown function [Ricinus communis]
7 Hb_009486_020 0.1108691967 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
8 Hb_006915_040 0.1130192979 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
9 Hb_000638_170 0.1136231887 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
10 Hb_029388_030 0.1172290889 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
11 Hb_000356_090 0.119919182 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
12 Hb_114310_080 0.1204104606 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002838_030 0.1214266198 - - 40S ribosomal protein S25A [Hevea brasiliensis]
14 Hb_001842_040 0.122226634 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
15 Hb_002324_010 0.1228610931 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
16 Hb_006452_040 0.1230818632 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
17 Hb_000102_020 0.1232935663 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
18 Hb_000363_320 0.1233068285 - - PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
19 Hb_000450_130 0.1234903642 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
20 Hb_001158_150 0.1240220685 - - hypothetical protein JCGZ_26407 [Jatropha curcas]

Gene co-expression network

sample Hb_000084_260 Hb_000084_260 Hb_003018_050 Hb_003018_050 Hb_000084_260--Hb_003018_050 Hb_004125_110 Hb_004125_110 Hb_000084_260--Hb_004125_110 Hb_000107_300 Hb_000107_300 Hb_000084_260--Hb_000107_300 Hb_003376_190 Hb_003376_190 Hb_000084_260--Hb_003376_190 Hb_007113_070 Hb_007113_070 Hb_000084_260--Hb_007113_070 Hb_009486_020 Hb_009486_020 Hb_000084_260--Hb_009486_020 Hb_002631_020 Hb_002631_020 Hb_003018_050--Hb_002631_020 Hb_006452_040 Hb_006452_040 Hb_003018_050--Hb_006452_040 Hb_003018_050--Hb_004125_110 Hb_001158_150 Hb_001158_150 Hb_003018_050--Hb_001158_150 Hb_130235_010 Hb_130235_010 Hb_003018_050--Hb_130235_010 Hb_000122_020 Hb_000122_020 Hb_003018_050--Hb_000122_020 Hb_003226_210 Hb_003226_210 Hb_004125_110--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_004125_110--Hb_001214_160 Hb_000997_120 Hb_000997_120 Hb_004125_110--Hb_000997_120 Hb_000134_070 Hb_000134_070 Hb_004125_110--Hb_000134_070 Hb_002660_030 Hb_002660_030 Hb_004125_110--Hb_002660_030 Hb_000215_330 Hb_000215_330 Hb_000107_300--Hb_000215_330 Hb_002314_010 Hb_002314_010 Hb_000107_300--Hb_002314_010 Hb_000107_300--Hb_003376_190 Hb_002303_060 Hb_002303_060 Hb_000107_300--Hb_002303_060 Hb_005306_070 Hb_005306_070 Hb_000107_300--Hb_005306_070 Hb_000826_100 Hb_000826_100 Hb_000107_300--Hb_000826_100 Hb_002324_010 Hb_002324_010 Hb_003376_190--Hb_002324_010 Hb_003376_190--Hb_000215_330 Hb_005235_030 Hb_005235_030 Hb_003376_190--Hb_005235_030 Hb_005269_080 Hb_005269_080 Hb_003376_190--Hb_005269_080 Hb_006915_040 Hb_006915_040 Hb_003376_190--Hb_006915_040 Hb_154948_040 Hb_154948_040 Hb_007113_070--Hb_154948_040 Hb_000002_380 Hb_000002_380 Hb_007113_070--Hb_000002_380 Hb_003671_020 Hb_003671_020 Hb_007113_070--Hb_003671_020 Hb_000403_060 Hb_000403_060 Hb_007113_070--Hb_000403_060 Hb_005867_020 Hb_005867_020 Hb_007113_070--Hb_005867_020 Hb_004889_020 Hb_004889_020 Hb_007113_070--Hb_004889_020 Hb_000638_170 Hb_000638_170 Hb_009486_020--Hb_000638_170 Hb_004052_050 Hb_004052_050 Hb_009486_020--Hb_004052_050 Hb_148121_040 Hb_148121_040 Hb_009486_020--Hb_148121_040 Hb_000805_240 Hb_000805_240 Hb_009486_020--Hb_000805_240 Hb_114310_080 Hb_114310_080 Hb_009486_020--Hb_114310_080 Hb_006831_120 Hb_006831_120 Hb_009486_020--Hb_006831_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.27774 2.61977 6.32329 14.3315 4.05698 7.77778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0877 25.0398 13.082 5.35677 1.46297

CAGE analysis