Hb_001842_050

Information

Type -
Description -
Location Contig1842: 105427-106488
Sequence    

Annotation

kegg
ID csv:101203469
description protein BUD31 homolog 1-like
nr
ID XP_012075869.1
description PREDICTED: protein BUD31 homolog 1-like [Jatropha curcas]
swissprot
ID Q94DE2
description Protein BUD31 homolog 1 OS=Oryza sativa subsp. japonica GN=Os01g0857700 PE=2 SV=1
trembl
ID A0A0A0LSL5
description Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153010 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein bud31 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18046: 105447-106613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001842_050 0.0 - - PREDICTED: protein BUD31 homolog 1-like [Jatropha curcas]
2 Hb_004162_210 0.133258745 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
3 Hb_000352_290 0.1462915588 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
4 Hb_000084_260 0.1469461609 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
5 Hb_006915_040 0.1480713945 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
6 Hb_130235_010 0.1498845196 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
7 Hb_000329_270 0.1522205894 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
8 Hb_003894_080 0.1523726597 - - PREDICTED: protein cornichon homolog 4 [Vitis vinifera]
9 Hb_006452_110 0.1544934052 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
10 Hb_006816_260 0.1572405764 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
11 Hb_000130_100 0.1576236404 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]
12 Hb_003018_050 0.1583726022 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
13 Hb_000803_200 0.1594631292 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
14 Hb_000356_090 0.1601448711 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
15 Hb_000849_130 0.1622056478 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
16 Hb_002631_260 0.1664875371 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
17 Hb_001054_100 0.1674635544 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
18 Hb_001047_240 0.169840042 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
19 Hb_004125_110 0.1699716644 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
20 Hb_000122_020 0.170518957 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001842_050 Hb_001842_050 Hb_004162_210 Hb_004162_210 Hb_001842_050--Hb_004162_210 Hb_000352_290 Hb_000352_290 Hb_001842_050--Hb_000352_290 Hb_000084_260 Hb_000084_260 Hb_001842_050--Hb_000084_260 Hb_006915_040 Hb_006915_040 Hb_001842_050--Hb_006915_040 Hb_130235_010 Hb_130235_010 Hb_001842_050--Hb_130235_010 Hb_000329_270 Hb_000329_270 Hb_001842_050--Hb_000329_270 Hb_001047_240 Hb_001047_240 Hb_004162_210--Hb_001047_240 Hb_004800_060 Hb_004800_060 Hb_004162_210--Hb_004800_060 Hb_007875_030 Hb_007875_030 Hb_004162_210--Hb_007875_030 Hb_153544_010 Hb_153544_010 Hb_004162_210--Hb_153544_010 Hb_124953_020 Hb_124953_020 Hb_004162_210--Hb_124953_020 Hb_004162_210--Hb_006915_040 Hb_001754_070 Hb_001754_070 Hb_000352_290--Hb_001754_070 Hb_004125_110 Hb_004125_110 Hb_000352_290--Hb_004125_110 Hb_000584_020 Hb_000584_020 Hb_000352_290--Hb_000584_020 Hb_000352_290--Hb_000084_260 Hb_178227_010 Hb_178227_010 Hb_000352_290--Hb_178227_010 Hb_003018_050 Hb_003018_050 Hb_000084_260--Hb_003018_050 Hb_000084_260--Hb_004125_110 Hb_000107_300 Hb_000107_300 Hb_000084_260--Hb_000107_300 Hb_003376_190 Hb_003376_190 Hb_000084_260--Hb_003376_190 Hb_007113_070 Hb_007113_070 Hb_000084_260--Hb_007113_070 Hb_009486_020 Hb_009486_020 Hb_000084_260--Hb_009486_020 Hb_000087_130 Hb_000087_130 Hb_006915_040--Hb_000087_130 Hb_000189_240 Hb_000189_240 Hb_006915_040--Hb_000189_240 Hb_002000_140 Hb_002000_140 Hb_006915_040--Hb_002000_140 Hb_179296_010 Hb_179296_010 Hb_006915_040--Hb_179296_010 Hb_174865_010 Hb_174865_010 Hb_006915_040--Hb_174865_010 Hb_006915_040--Hb_003376_190 Hb_130235_010--Hb_003018_050 Hb_130235_010--Hb_004125_110 Hb_001054_100 Hb_001054_100 Hb_130235_010--Hb_001054_100 Hb_007735_030 Hb_007735_030 Hb_130235_010--Hb_007735_030 Hb_140543_010 Hb_140543_010 Hb_130235_010--Hb_140543_010 Hb_130235_010--Hb_001754_070 Hb_048476_100 Hb_048476_100 Hb_000329_270--Hb_048476_100 Hb_003849_130 Hb_003849_130 Hb_000329_270--Hb_003849_130 Hb_055062_020 Hb_055062_020 Hb_000329_270--Hb_055062_020 Hb_000027_040 Hb_000027_040 Hb_000329_270--Hb_000027_040 Hb_000258_250 Hb_000258_250 Hb_000329_270--Hb_000258_250 Hb_000803_200 Hb_000803_200 Hb_000329_270--Hb_000803_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.8407 3.41611 21.8556 54.5541 12.1593 20.1596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.996 58.5988 25.857 27.581 1.91321

CAGE analysis