Hb_032717_020

Information

Type -
Description -
Location Contig32717: 57176-61835
Sequence    

Annotation

kegg
ID vvi:100259680
description vacuolar protein sorting-associated protein 2 homolog 2
nr
ID XP_012075551.1
description PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
swissprot
ID Q0WTY4
description Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
trembl
ID A0A067KF80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09174 PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 2 homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34424: 57190-61872 , PASA_asmbl_34425: 57190-61769
cDNA
(Sanger)
(ID:Location)		 014_E16.ab1: 57190-61293 , 041_P18.ab1: 57190-61039

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032717_020 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
2 Hb_048476_100 0.1174986796 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]
3 Hb_002686_180 0.1450868883 - - PREDICTED: early nodulin-93-like [Populus euphratica]
4 Hb_000329_270 0.1497711236 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
5 Hb_000184_210 0.1602956179 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
6 Hb_003849_130 0.1635922444 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
7 Hb_000340_500 0.1660592604 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
8 Hb_006028_020 0.167111371 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
9 Hb_006671_010 0.1699686866 - - PREDICTED: 5' exonuclease Apollo isoform X1 [Jatropha curcas]
10 Hb_000027_040 0.170879401 - - PREDICTED: uncharacterized protein LOC105636980 [Jatropha curcas]
11 Hb_000258_250 0.1727075159 - - Origin recognition complex subunit, putative [Ricinus communis]
12 Hb_001431_080 0.1745921624 - - 40S ribosomal protein S11, putative [Ricinus communis]
13 Hb_001511_260 0.1746788621 - - tryptophan biosynthesis protein, putative [Ricinus communis]
14 Hb_001073_080 0.1746824077 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
15 Hb_003582_070 0.1763074455 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004041_020 0.1783431621 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
17 Hb_055062_020 0.1792625181 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
18 Hb_000134_320 0.1818999233 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
19 Hb_132840_140 0.1820617625 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
20 Hb_000318_210 0.1821612792 - - PREDICTED: 40S ribosomal protein S12-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_032717_020 Hb_032717_020 Hb_048476_100 Hb_048476_100 Hb_032717_020--Hb_048476_100 Hb_002686_180 Hb_002686_180 Hb_032717_020--Hb_002686_180 Hb_000329_270 Hb_000329_270 Hb_032717_020--Hb_000329_270 Hb_000184_210 Hb_000184_210 Hb_032717_020--Hb_000184_210 Hb_003849_130 Hb_003849_130 Hb_032717_020--Hb_003849_130 Hb_000340_500 Hb_000340_500 Hb_032717_020--Hb_000340_500 Hb_048476_100--Hb_000329_270 Hb_048476_100--Hb_003849_130 Hb_000803_200 Hb_000803_200 Hb_048476_100--Hb_000803_200 Hb_055062_020 Hb_055062_020 Hb_048476_100--Hb_055062_020 Hb_002374_080 Hb_002374_080 Hb_048476_100--Hb_002374_080 Hb_000134_320 Hb_000134_320 Hb_002686_180--Hb_000134_320 Hb_024074_010 Hb_024074_010 Hb_002686_180--Hb_024074_010 Hb_015299_030 Hb_015299_030 Hb_002686_180--Hb_015299_030 Hb_001431_080 Hb_001431_080 Hb_002686_180--Hb_001431_080 Hb_132840_140 Hb_132840_140 Hb_002686_180--Hb_132840_140 Hb_098315_020 Hb_098315_020 Hb_002686_180--Hb_098315_020 Hb_000329_270--Hb_003849_130 Hb_000329_270--Hb_055062_020 Hb_000027_040 Hb_000027_040 Hb_000329_270--Hb_000027_040 Hb_000258_250 Hb_000258_250 Hb_000329_270--Hb_000258_250 Hb_000329_270--Hb_000803_200 Hb_000473_020 Hb_000473_020 Hb_000184_210--Hb_000473_020 Hb_001511_260 Hb_001511_260 Hb_000184_210--Hb_001511_260 Hb_009620_100 Hb_009620_100 Hb_000184_210--Hb_009620_100 Hb_000584_020 Hb_000584_020 Hb_000184_210--Hb_000584_020 Hb_000184_210--Hb_048476_100 Hb_003849_130--Hb_055062_020 Hb_003057_090 Hb_003057_090 Hb_003849_130--Hb_003057_090 Hb_000694_040 Hb_000694_040 Hb_003849_130--Hb_000694_040 Hb_010577_030 Hb_010577_030 Hb_003849_130--Hb_010577_030 Hb_004041_020 Hb_004041_020 Hb_003849_130--Hb_004041_020 Hb_002374_570 Hb_002374_570 Hb_003849_130--Hb_002374_570 Hb_002081_030 Hb_002081_030 Hb_000340_500--Hb_002081_030 Hb_000809_060 Hb_000809_060 Hb_000340_500--Hb_000809_060 Hb_000340_500--Hb_000258_250 Hb_000340_500--Hb_002686_180 Hb_000340_500--Hb_024074_010 Hb_001726_040 Hb_001726_040 Hb_000340_500--Hb_001726_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1502 1.76449 53.9951 27.3886 10.9967 11.244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7851 59.2004 24.6016 8.55015 3.71711

CAGE analysis