Hb_003938_210

Information

Type -
Description -
Location Contig3938: 182118-185894
Sequence    

Annotation

kegg
ID rcu:RCOM_0463840
description triacylglycerol lipase, putative
nr
ID XP_002532378.1
description triacylglycerol lipase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T2A9
description Triacylglycerol lipase, putative OS=Ricinus communis GN=RCOM_0463840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39440: 182078-184221 , PASA_asmbl_39441: 184261-184381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_210 0.0 - - triacylglycerol lipase, putative [Ricinus communis]
2 Hb_001437_090 0.2249963061 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit [Jatropha curcas]
3 Hb_000497_200 0.2710215427 - - -
4 Hb_001140_070 0.2739725215 - - Chromosome transmission fidelity protein 8, putative isoform 2 [Theobroma cacao]
5 Hb_050959_010 0.2760918944 - - -
6 Hb_000656_190 0.2823681302 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]
7 Hb_006210_030 0.2851072966 - - -
8 Hb_000029_090 0.287011159 - - Nicalin precursor, putative [Ricinus communis]
9 Hb_000622_200 0.2870984263 - - aldose 1-epimerase, putative [Ricinus communis]
10 Hb_039021_010 0.2893430997 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
11 Hb_004931_080 0.2930348295 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Jatropha curcas]
12 Hb_000654_030 0.2969016362 - - -
13 Hb_000317_160 0.2970790477 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
14 Hb_005180_010 0.3005354671 - - cyclophilin [Hevea brasiliensis]
15 Hb_124677_030 0.3013932241 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
16 Hb_000907_150 0.3021085191 - - hypothetical protein L484_004295 [Morus notabilis]
17 Hb_000237_020 0.3021277624 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
18 Hb_002259_060 0.3023997368 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X4 [Jatropha curcas]
19 Hb_000580_100 0.3033395726 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
20 Hb_001080_050 0.3036738127 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]

Gene co-expression network

sample Hb_003938_210 Hb_003938_210 Hb_001437_090 Hb_001437_090 Hb_003938_210--Hb_001437_090 Hb_000497_200 Hb_000497_200 Hb_003938_210--Hb_000497_200 Hb_001140_070 Hb_001140_070 Hb_003938_210--Hb_001140_070 Hb_050959_010 Hb_050959_010 Hb_003938_210--Hb_050959_010 Hb_000656_190 Hb_000656_190 Hb_003938_210--Hb_000656_190 Hb_006210_030 Hb_006210_030 Hb_003938_210--Hb_006210_030 Hb_009393_190 Hb_009393_190 Hb_001437_090--Hb_009393_190 Hb_009615_020 Hb_009615_020 Hb_001437_090--Hb_009615_020 Hb_001437_090--Hb_001140_070 Hb_000948_200 Hb_000948_200 Hb_001437_090--Hb_000948_200 Hb_000868_050 Hb_000868_050 Hb_001437_090--Hb_000868_050 Hb_005843_130 Hb_005843_130 Hb_000497_200--Hb_005843_130 Hb_080332_010 Hb_080332_010 Hb_000497_200--Hb_080332_010 Hb_000248_100 Hb_000248_100 Hb_000497_200--Hb_000248_100 Hb_000098_200 Hb_000098_200 Hb_000497_200--Hb_000098_200 Hb_001085_070 Hb_001085_070 Hb_000497_200--Hb_001085_070 Hb_000755_060 Hb_000755_060 Hb_000497_200--Hb_000755_060 Hb_182424_030 Hb_182424_030 Hb_001140_070--Hb_182424_030 Hb_001396_210 Hb_001396_210 Hb_001140_070--Hb_001396_210 Hb_002027_390 Hb_002027_390 Hb_001140_070--Hb_002027_390 Hb_001140_070--Hb_009615_020 Hb_039021_010 Hb_039021_010 Hb_001140_070--Hb_039021_010 Hb_000345_510 Hb_000345_510 Hb_001140_070--Hb_000345_510 Hb_006384_010 Hb_006384_010 Hb_050959_010--Hb_006384_010 Hb_050959_010--Hb_001140_070 Hb_001825_040 Hb_001825_040 Hb_050959_010--Hb_001825_040 Hb_116420_010 Hb_116420_010 Hb_050959_010--Hb_116420_010 Hb_002259_060 Hb_002259_060 Hb_050959_010--Hb_002259_060 Hb_000889_010 Hb_000889_010 Hb_050959_010--Hb_000889_010 Hb_000656_190--Hb_000889_010 Hb_000913_040 Hb_000913_040 Hb_000656_190--Hb_000913_040 Hb_004449_180 Hb_004449_180 Hb_000656_190--Hb_004449_180 Hb_001208_040 Hb_001208_040 Hb_000656_190--Hb_001208_040 Hb_007390_020 Hb_007390_020 Hb_000656_190--Hb_007390_020 Hb_002477_010 Hb_002477_010 Hb_000656_190--Hb_002477_010 Hb_006210_030--Hb_000656_190 Hb_005686_120 Hb_005686_120 Hb_006210_030--Hb_005686_120 Hb_101146_010 Hb_101146_010 Hb_006210_030--Hb_101146_010 Hb_004218_120 Hb_004218_120 Hb_006210_030--Hb_004218_120 Hb_172632_050 Hb_172632_050 Hb_006210_030--Hb_172632_050 Hb_012807_130 Hb_012807_130 Hb_006210_030--Hb_012807_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0353868 0.121946 0.094184 0.0355115 0.0185673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0808989 0.0318182 0 0.101964 0

CAGE analysis