Hb_000755_060

Information

Type -
Description -
Location Contig755: 59062-63658
Sequence    

Annotation

kegg
ID egr:104424740
description uncharacterized LOC104424740
nr
ID XP_010035542.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104424740 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A0B0PJ19
description Putative membrane yuiD OS=Gossypium arboreum GN=F383_03430 PE=4 SV=1
Gene Ontology
ID GO:0005886
description acid phosphatase vanadium-dependent haloperoxidase-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57011: 59996-60177 , PASA_asmbl_57014: 60893-61018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000755_060 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104424740 [Eucalyptus grandis]
2 Hb_000098_200 0.1541457754 - - PREDICTED: serine hydroxymethyltransferase 7-like isoform X2 [Populus euphratica]
3 Hb_001227_100 0.1687775504 - - RecName: Full=Enolase 1; AltName: Full=2-phospho-D-glycerate hydro-lyase 1; AltName: Full=2-phosphoglycerate dehydratase 1; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
4 Hb_000029_440 0.1705766201 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
5 Hb_001080_130 0.1725422495 - - catalase [Hevea brasiliensis]
6 Hb_012180_010 0.1746697974 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
7 Hb_000720_080 0.1805972266 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
8 Hb_000622_110 0.1808360999 - - cmp-sialic acid transporter, putative [Ricinus communis]
9 Hb_000926_340 0.1834847634 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
10 Hb_000140_450 0.1856763707 - - PREDICTED: calreticulin-3-like [Populus euphratica]
11 Hb_188063_050 0.1872780676 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
12 Hb_002477_040 0.1872895376 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]
13 Hb_031931_020 0.189225218 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
14 Hb_000235_050 0.1907422451 - - conserved hypothetical protein [Ricinus communis]
15 Hb_102591_010 0.1908553937 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
16 Hb_004064_040 0.1926014135 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
17 Hb_000849_080 0.1947652476 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
18 Hb_086639_080 0.1951130235 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002808_020 0.1969813631 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
20 Hb_000836_300 0.1972680546 - - caax prenyl protease ste24, putative [Ricinus communis]

Gene co-expression network

sample Hb_000755_060 Hb_000755_060 Hb_000098_200 Hb_000098_200 Hb_000755_060--Hb_000098_200 Hb_001227_100 Hb_001227_100 Hb_000755_060--Hb_001227_100 Hb_000029_440 Hb_000029_440 Hb_000755_060--Hb_000029_440 Hb_001080_130 Hb_001080_130 Hb_000755_060--Hb_001080_130 Hb_012180_010 Hb_012180_010 Hb_000755_060--Hb_012180_010 Hb_000720_080 Hb_000720_080 Hb_000755_060--Hb_000720_080 Hb_000235_050 Hb_000235_050 Hb_000098_200--Hb_000235_050 Hb_004746_010 Hb_004746_010 Hb_000098_200--Hb_004746_010 Hb_000098_200--Hb_000029_440 Hb_000401_010 Hb_000401_010 Hb_000098_200--Hb_000401_010 Hb_135959_010 Hb_135959_010 Hb_000098_200--Hb_135959_010 Hb_002213_090 Hb_002213_090 Hb_001227_100--Hb_002213_090 Hb_033772_070 Hb_033772_070 Hb_001227_100--Hb_033772_070 Hb_000001_190 Hb_000001_190 Hb_001227_100--Hb_000001_190 Hb_002836_100 Hb_002836_100 Hb_001227_100--Hb_002836_100 Hb_004096_050 Hb_004096_050 Hb_001227_100--Hb_004096_050 Hb_001497_060 Hb_001497_060 Hb_001227_100--Hb_001497_060 Hb_030565_110 Hb_030565_110 Hb_000029_440--Hb_030565_110 Hb_002072_010 Hb_002072_010 Hb_000029_440--Hb_002072_010 Hb_000254_070 Hb_000254_070 Hb_000029_440--Hb_000254_070 Hb_000003_310 Hb_000003_310 Hb_000029_440--Hb_000003_310 Hb_004330_080 Hb_004330_080 Hb_000029_440--Hb_004330_080 Hb_069619_010 Hb_069619_010 Hb_000029_440--Hb_069619_010 Hb_000221_120 Hb_000221_120 Hb_001080_130--Hb_000221_120 Hb_150346_010 Hb_150346_010 Hb_001080_130--Hb_150346_010 Hb_000140_450 Hb_000140_450 Hb_001080_130--Hb_000140_450 Hb_000500_080 Hb_000500_080 Hb_001080_130--Hb_000500_080 Hb_000030_240 Hb_000030_240 Hb_001080_130--Hb_000030_240 Hb_006508_030 Hb_006508_030 Hb_001080_130--Hb_006508_030 Hb_188063_050 Hb_188063_050 Hb_012180_010--Hb_188063_050 Hb_000098_050 Hb_000098_050 Hb_012180_010--Hb_000098_050 Hb_001085_080 Hb_001085_080 Hb_012180_010--Hb_001085_080 Hb_007137_050 Hb_007137_050 Hb_012180_010--Hb_007137_050 Hb_005970_010 Hb_005970_010 Hb_012180_010--Hb_005970_010 Hb_000622_110 Hb_000622_110 Hb_012180_010--Hb_000622_110 Hb_000622_350 Hb_000622_350 Hb_000720_080--Hb_000622_350 Hb_000002_480 Hb_000002_480 Hb_000720_080--Hb_000002_480 Hb_000331_370 Hb_000331_370 Hb_000720_080--Hb_000331_370 Hb_000004_010 Hb_000004_010 Hb_000720_080--Hb_000004_010 Hb_000077_290 Hb_000077_290 Hb_000720_080--Hb_000077_290 Hb_004126_040 Hb_004126_040 Hb_000720_080--Hb_004126_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.96159 2.89221 6.00503 16.3572 7.12638 5.02563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79618 2.44375 0 10.6925 4.32754

CAGE analysis