Hb_080332_010

Information

Type -
Description -
Location Contig80332: 2028-3057
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10590g
description POPTRDRAFT_1106887; hypothetical protein
nr
ID XP_002325083.1
description hypothetical protein POPTR_0018s10590g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IM43
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10590g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080332_010 0.0 - - hypothetical protein POPTR_0018s10590g [Populus trichocarpa]
2 Hb_010315_100 0.145593859 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
3 Hb_003430_080 0.1558619702 - - zinc finger protein, putative [Ricinus communis]
4 Hb_000926_340 0.1577425596 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
5 Hb_000318_040 0.1599535476 - - hypothetical protein JCGZ_04877 [Jatropha curcas]
6 Hb_028487_130 0.1611859302 - - kinase family protein [Populus trichocarpa]
7 Hb_002250_050 0.1618783032 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
8 Hb_006829_070 0.164499888 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
9 Hb_000134_120 0.1671417058 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
10 Hb_012353_040 0.1708337508 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_000853_330 0.1723899936 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
12 Hb_001255_010 0.1726034691 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
13 Hb_000656_300 0.1736140607 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
14 Hb_115137_010 0.1749842998 - - PREDICTED: probable protein S-acyltransferase 23 isoform X2 [Jatropha curcas]
15 Hb_002498_240 0.1752386605 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
16 Hb_002217_080 0.1763089499 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
17 Hb_003849_120 0.1763828493 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
18 Hb_000866_070 0.1764266437 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
19 Hb_003090_160 0.1765318619 - - -
20 Hb_000671_030 0.1772391869 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]

Gene co-expression network

sample Hb_080332_010 Hb_080332_010 Hb_010315_100 Hb_010315_100 Hb_080332_010--Hb_010315_100 Hb_003430_080 Hb_003430_080 Hb_080332_010--Hb_003430_080 Hb_000926_340 Hb_000926_340 Hb_080332_010--Hb_000926_340 Hb_000318_040 Hb_000318_040 Hb_080332_010--Hb_000318_040 Hb_028487_130 Hb_028487_130 Hb_080332_010--Hb_028487_130 Hb_002250_050 Hb_002250_050 Hb_080332_010--Hb_002250_050 Hb_000363_180 Hb_000363_180 Hb_010315_100--Hb_000363_180 Hb_002235_370 Hb_002235_370 Hb_010315_100--Hb_002235_370 Hb_002539_050 Hb_002539_050 Hb_010315_100--Hb_002539_050 Hb_003849_120 Hb_003849_120 Hb_010315_100--Hb_003849_120 Hb_186247_010 Hb_186247_010 Hb_010315_100--Hb_186247_010 Hb_000196_010 Hb_000196_010 Hb_010315_100--Hb_000196_010 Hb_005694_180 Hb_005694_180 Hb_003430_080--Hb_005694_180 Hb_000003_030 Hb_000003_030 Hb_003430_080--Hb_000003_030 Hb_000740_090 Hb_000740_090 Hb_003430_080--Hb_000740_090 Hb_001195_420 Hb_001195_420 Hb_003430_080--Hb_001195_420 Hb_023226_030 Hb_023226_030 Hb_003430_080--Hb_023226_030 Hb_001009_150 Hb_001009_150 Hb_003430_080--Hb_001009_150 Hb_000622_110 Hb_000622_110 Hb_000926_340--Hb_000622_110 Hb_004126_040 Hb_004126_040 Hb_000926_340--Hb_004126_040 Hb_000418_020 Hb_000418_020 Hb_000926_340--Hb_000418_020 Hb_000256_230 Hb_000256_230 Hb_000926_340--Hb_000256_230 Hb_002486_050 Hb_002486_050 Hb_000926_340--Hb_002486_050 Hb_003209_130 Hb_003209_130 Hb_000926_340--Hb_003209_130 Hb_001558_040 Hb_001558_040 Hb_000318_040--Hb_001558_040 Hb_000318_040--Hb_001009_150 Hb_002995_040 Hb_002995_040 Hb_000318_040--Hb_002995_040 Hb_001103_090 Hb_001103_090 Hb_000318_040--Hb_001103_090 Hb_004355_040 Hb_004355_040 Hb_000318_040--Hb_004355_040 Hb_007137_050 Hb_007137_050 Hb_000318_040--Hb_007137_050 Hb_001135_030 Hb_001135_030 Hb_028487_130--Hb_001135_030 Hb_018691_020 Hb_018691_020 Hb_028487_130--Hb_018691_020 Hb_000203_270 Hb_000203_270 Hb_028487_130--Hb_000203_270 Hb_002849_070 Hb_002849_070 Hb_028487_130--Hb_002849_070 Hb_003849_220 Hb_003849_220 Hb_028487_130--Hb_003849_220 Hb_028487_130--Hb_010315_100 Hb_001255_010 Hb_001255_010 Hb_002250_050--Hb_001255_010 Hb_017159_010 Hb_017159_010 Hb_002250_050--Hb_017159_010 Hb_000523_030 Hb_000523_030 Hb_002250_050--Hb_000523_030 Hb_003305_030 Hb_003305_030 Hb_002250_050--Hb_003305_030 Hb_004837_050 Hb_004837_050 Hb_002250_050--Hb_004837_050 Hb_009247_010 Hb_009247_010 Hb_002250_050--Hb_009247_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.601039 2.40357 3.66797 4.73572 1.20722 1.42254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38167 0.465112 0 1.65917 1.63769

CAGE analysis