Hb_028487_130

Information

Type -
Description -
Location Contig28487: 121131-125381
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11990g
description POPTRDRAFT_231820; kinase family protein
nr
ID XP_002315871.2
description kinase family protein [Populus trichocarpa]
swissprot
ID Q8GYA4
description Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3
trembl
ID B9HW43
description Kinase family protein OS=Populus trichocarpa GN=POPTR_0010s11990g PE=4 SV=2
Gene Ontology
ID GO:0005622
description receptor-like protein kinase at4g00960

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29808: 121822-122075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_130 0.0 - - kinase family protein [Populus trichocarpa]
2 Hb_001135_030 0.1221057859 - - PREDICTED: interaptin-like [Jatropha curcas]
3 Hb_018691_020 0.1235801899 - - -
4 Hb_000203_270 0.1281096893 - - alpha-xylosidase, putative [Ricinus communis]
5 Hb_002849_070 0.1313123149 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
6 Hb_003849_220 0.1364421224 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
7 Hb_010315_100 0.1367524549 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
8 Hb_000261_280 0.1398591828 - - BnaA10g23810D [Brassica napus]
9 Hb_056196_060 0.1421654042 - - hexokinase [Manihot esculenta]
10 Hb_000671_030 0.1476277859 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
11 Hb_000803_180 0.1489158619 - - hexokinase [Manihot esculenta]
12 Hb_004218_120 0.1491323868 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
13 Hb_000523_030 0.1496433114 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
14 Hb_178793_010 0.1496457259 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
15 Hb_000753_160 0.1503933665 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
16 Hb_002325_060 0.1505276956 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
17 Hb_003670_030 0.1510592112 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
18 Hb_003430_080 0.1515631718 - - zinc finger protein, putative [Ricinus communis]
19 Hb_001255_010 0.1531718781 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
20 Hb_003777_130 0.1550090433 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]

Gene co-expression network

sample Hb_028487_130 Hb_028487_130 Hb_001135_030 Hb_001135_030 Hb_028487_130--Hb_001135_030 Hb_018691_020 Hb_018691_020 Hb_028487_130--Hb_018691_020 Hb_000203_270 Hb_000203_270 Hb_028487_130--Hb_000203_270 Hb_002849_070 Hb_002849_070 Hb_028487_130--Hb_002849_070 Hb_003849_220 Hb_003849_220 Hb_028487_130--Hb_003849_220 Hb_010315_100 Hb_010315_100 Hb_028487_130--Hb_010315_100 Hb_001135_030--Hb_000203_270 Hb_000035_050 Hb_000035_050 Hb_001135_030--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_001135_030--Hb_007253_010 Hb_013358_020 Hb_013358_020 Hb_001135_030--Hb_013358_020 Hb_159809_050 Hb_159809_050 Hb_001135_030--Hb_159809_050 Hb_004218_120 Hb_004218_120 Hb_001135_030--Hb_004218_120 Hb_178793_010 Hb_178793_010 Hb_018691_020--Hb_178793_010 Hb_001255_010 Hb_001255_010 Hb_018691_020--Hb_001255_010 Hb_007136_010 Hb_007136_010 Hb_018691_020--Hb_007136_010 Hb_053519_010 Hb_053519_010 Hb_018691_020--Hb_053519_010 Hb_001518_060 Hb_001518_060 Hb_018691_020--Hb_001518_060 Hb_004987_020 Hb_004987_020 Hb_000203_270--Hb_004987_020 Hb_000203_270--Hb_002849_070 Hb_002739_120 Hb_002739_120 Hb_000203_270--Hb_002739_120 Hb_000200_170 Hb_000200_170 Hb_000203_270--Hb_000200_170 Hb_003599_030 Hb_003599_030 Hb_000203_270--Hb_003599_030 Hb_002849_070--Hb_000200_170 Hb_000056_080 Hb_000056_080 Hb_002849_070--Hb_000056_080 Hb_000735_140 Hb_000735_140 Hb_002849_070--Hb_000735_140 Hb_033363_010 Hb_033363_010 Hb_002849_070--Hb_033363_010 Hb_001818_060 Hb_001818_060 Hb_002849_070--Hb_001818_060 Hb_000671_080 Hb_000671_080 Hb_003849_220--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_003849_220--Hb_001257_100 Hb_000261_280 Hb_000261_280 Hb_003849_220--Hb_000261_280 Hb_000671_030 Hb_000671_030 Hb_003849_220--Hb_000671_030 Hb_005288_140 Hb_005288_140 Hb_003849_220--Hb_005288_140 Hb_003777_130 Hb_003777_130 Hb_003849_220--Hb_003777_130 Hb_000363_180 Hb_000363_180 Hb_010315_100--Hb_000363_180 Hb_002235_370 Hb_002235_370 Hb_010315_100--Hb_002235_370 Hb_002539_050 Hb_002539_050 Hb_010315_100--Hb_002539_050 Hb_003849_120 Hb_003849_120 Hb_010315_100--Hb_003849_120 Hb_186247_010 Hb_186247_010 Hb_010315_100--Hb_186247_010 Hb_000196_010 Hb_000196_010 Hb_010315_100--Hb_000196_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33301 10.0917 9.80218 11.7069 3.38992 1.49801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3538 2.4537 0.522894 5.05068 2.91174

CAGE analysis