Hb_001437_090

Information

Type -
Description -
Location Contig1437: 60300-65547
Sequence    

Annotation

kegg
ID cit:102625249
description phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit-like
nr
ID XP_012064752.1
description PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit [Jatropha curcas]
swissprot
ID P87172
description Phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi3 PE=3 SV=1
trembl
ID V4T1E9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001076mg PE=4 SV=1
Gene Ontology
ID GO:0016757
description phosphatidylinositol n-acetylglucosaminyltransferase gpi3 subunit-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_090 0.0 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit [Jatropha curcas]
2 Hb_003938_210 0.2249963061 - - triacylglycerol lipase, putative [Ricinus communis]
3 Hb_009393_190 0.2486357371 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
4 Hb_009615_020 0.2716924959 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7-like [Jatropha curcas]
5 Hb_001140_070 0.2954526196 - - Chromosome transmission fidelity protein 8, putative isoform 2 [Theobroma cacao]
6 Hb_000948_200 0.2973036584 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
7 Hb_000868_050 0.2981216962 - - RAD51 homolog [Populus nigra]
8 Hb_000656_190 0.3010549112 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]
9 Hb_001195_300 0.3060571708 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
10 Hb_002411_060 0.3064210858 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
11 Hb_000155_150 0.308739704 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
12 Hb_001080_050 0.3128861059 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
13 Hb_150766_020 0.3131032954 - - hypothetical protein VITISV_030841 [Vitis vinifera]
14 Hb_000172_160 0.3145295375 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
15 Hb_004162_230 0.3153202226 - - PREDICTED: histone H2B [Jatropha curcas]
16 Hb_003078_060 0.3165032943 - - 60S ribosomal protein L32, putative [Ricinus communis]
17 Hb_000157_080 0.3173860108 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
18 Hb_001005_160 0.3174407434 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000023_160 0.318645817 - - PREDICTED: uncharacterized protein LOC105636423 isoform X1 [Jatropha curcas]
20 Hb_124677_030 0.3232460643 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]

Gene co-expression network

sample Hb_001437_090 Hb_001437_090 Hb_003938_210 Hb_003938_210 Hb_001437_090--Hb_003938_210 Hb_009393_190 Hb_009393_190 Hb_001437_090--Hb_009393_190 Hb_009615_020 Hb_009615_020 Hb_001437_090--Hb_009615_020 Hb_001140_070 Hb_001140_070 Hb_001437_090--Hb_001140_070 Hb_000948_200 Hb_000948_200 Hb_001437_090--Hb_000948_200 Hb_000868_050 Hb_000868_050 Hb_001437_090--Hb_000868_050 Hb_000497_200 Hb_000497_200 Hb_003938_210--Hb_000497_200 Hb_003938_210--Hb_001140_070 Hb_050959_010 Hb_050959_010 Hb_003938_210--Hb_050959_010 Hb_000656_190 Hb_000656_190 Hb_003938_210--Hb_000656_190 Hb_006210_030 Hb_006210_030 Hb_003938_210--Hb_006210_030 Hb_000157_080 Hb_000157_080 Hb_009393_190--Hb_000157_080 Hb_009393_190--Hb_009615_020 Hb_000574_280 Hb_000574_280 Hb_009393_190--Hb_000574_280 Hb_100743_010 Hb_100743_010 Hb_009393_190--Hb_100743_010 Hb_000959_310 Hb_000959_310 Hb_009393_190--Hb_000959_310 Hb_009615_020--Hb_001140_070 Hb_006816_260 Hb_006816_260 Hb_009615_020--Hb_006816_260 Hb_000562_030 Hb_000562_030 Hb_009615_020--Hb_000562_030 Hb_000023_160 Hb_000023_160 Hb_009615_020--Hb_000023_160 Hb_000329_270 Hb_000329_270 Hb_009615_020--Hb_000329_270 Hb_000916_070 Hb_000916_070 Hb_009615_020--Hb_000916_070 Hb_182424_030 Hb_182424_030 Hb_001140_070--Hb_182424_030 Hb_001396_210 Hb_001396_210 Hb_001140_070--Hb_001396_210 Hb_002027_390 Hb_002027_390 Hb_001140_070--Hb_002027_390 Hb_039021_010 Hb_039021_010 Hb_001140_070--Hb_039021_010 Hb_000345_510 Hb_000345_510 Hb_001140_070--Hb_000345_510 Hb_000544_030 Hb_000544_030 Hb_000948_200--Hb_000544_030 Hb_000217_020 Hb_000217_020 Hb_000948_200--Hb_000217_020 Hb_000123_270 Hb_000123_270 Hb_000948_200--Hb_000123_270 Hb_000005_110 Hb_000005_110 Hb_000948_200--Hb_000005_110 Hb_003020_210 Hb_003020_210 Hb_000948_200--Hb_003020_210 Hb_083380_020 Hb_083380_020 Hb_000948_200--Hb_083380_020 Hb_000868_050--Hb_000916_070 Hb_003001_090 Hb_003001_090 Hb_000868_050--Hb_003001_090 Hb_026549_010 Hb_026549_010 Hb_000868_050--Hb_026549_010 Hb_090158_010 Hb_090158_010 Hb_000868_050--Hb_090158_010 Hb_002490_010 Hb_002490_010 Hb_000868_050--Hb_002490_010 Hb_004195_230 Hb_004195_230 Hb_000868_050--Hb_004195_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.133565 0.098731 0.0288426 0.0345096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0660619 0.0519455 0 0.0630419 0

CAGE analysis