Hb_100743_010

Information

Type -
Description -
Location Contig100743: 2990-3160
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02120g
description hypothetical protein
nr
ID KDP30375.1
description hypothetical protein JCGZ_17104 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17104 PE=4 SV=1
Gene Ontology
ID GO:0010997
description valine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100743_010 0.0 - - hypothetical protein JCGZ_17104 [Jatropha curcas]
2 Hb_000184_210 0.2319141052 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
3 Hb_000352_290 0.2330555833 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
4 Hb_001842_050 0.2375351594 - - PREDICTED: protein BUD31 homolog 1-like [Jatropha curcas]
5 Hb_110390_010 0.2397503962 - - hypothetical protein JCGZ_19741 [Jatropha curcas]
6 Hb_000123_270 0.2403683978 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000948_200 0.2466511513 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
8 Hb_009393_190 0.247690032 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
9 Hb_000329_270 0.2569213941 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
10 Hb_000130_100 0.2590510017 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]
11 Hb_004602_030 0.2613291278 - - histone H4 [Zea mays]
12 Hb_000243_040 0.2638613381 - - -
13 Hb_000584_020 0.2641804544 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
14 Hb_000463_130 0.2643095027 - - unnamed protein product [Coffea canephora]
15 Hb_000975_180 0.2649785546 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
16 Hb_006452_110 0.2666818735 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
17 Hb_003502_100 0.2691528412 - - -
18 Hb_178227_010 0.2698208444 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
19 Hb_001488_400 0.2718883775 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
20 Hb_032717_020 0.272447441 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_100743_010 Hb_100743_010 Hb_000184_210 Hb_000184_210 Hb_100743_010--Hb_000184_210 Hb_000352_290 Hb_000352_290 Hb_100743_010--Hb_000352_290 Hb_001842_050 Hb_001842_050 Hb_100743_010--Hb_001842_050 Hb_110390_010 Hb_110390_010 Hb_100743_010--Hb_110390_010 Hb_000123_270 Hb_000123_270 Hb_100743_010--Hb_000123_270 Hb_000948_200 Hb_000948_200 Hb_100743_010--Hb_000948_200 Hb_032717_020 Hb_032717_020 Hb_000184_210--Hb_032717_020 Hb_000473_020 Hb_000473_020 Hb_000184_210--Hb_000473_020 Hb_001511_260 Hb_001511_260 Hb_000184_210--Hb_001511_260 Hb_009620_100 Hb_009620_100 Hb_000184_210--Hb_009620_100 Hb_000584_020 Hb_000584_020 Hb_000184_210--Hb_000584_020 Hb_048476_100 Hb_048476_100 Hb_000184_210--Hb_048476_100 Hb_001754_070 Hb_001754_070 Hb_000352_290--Hb_001754_070 Hb_000352_290--Hb_001842_050 Hb_004125_110 Hb_004125_110 Hb_000352_290--Hb_004125_110 Hb_000352_290--Hb_000584_020 Hb_000084_260 Hb_000084_260 Hb_000352_290--Hb_000084_260 Hb_178227_010 Hb_178227_010 Hb_000352_290--Hb_178227_010 Hb_004162_210 Hb_004162_210 Hb_001842_050--Hb_004162_210 Hb_001842_050--Hb_000084_260 Hb_006915_040 Hb_006915_040 Hb_001842_050--Hb_006915_040 Hb_130235_010 Hb_130235_010 Hb_001842_050--Hb_130235_010 Hb_000329_270 Hb_000329_270 Hb_001842_050--Hb_000329_270 Hb_110390_010--Hb_000329_270 Hb_110390_010--Hb_001842_050 Hb_000803_200 Hb_000803_200 Hb_110390_010--Hb_000803_200 Hb_002863_030 Hb_002863_030 Hb_110390_010--Hb_002863_030 Hb_004884_160 Hb_004884_160 Hb_110390_010--Hb_004884_160 Hb_110390_010--Hb_000084_260 Hb_003020_210 Hb_003020_210 Hb_000123_270--Hb_003020_210 Hb_005000_330 Hb_005000_330 Hb_000123_270--Hb_005000_330 Hb_000123_270--Hb_000948_200 Hb_003758_020 Hb_003758_020 Hb_000123_270--Hb_003758_020 Hb_004093_020 Hb_004093_020 Hb_000123_270--Hb_004093_020 Hb_083380_020 Hb_083380_020 Hb_000123_270--Hb_083380_020 Hb_000544_030 Hb_000544_030 Hb_000948_200--Hb_000544_030 Hb_000217_020 Hb_000217_020 Hb_000948_200--Hb_000217_020 Hb_000005_110 Hb_000005_110 Hb_000948_200--Hb_000005_110 Hb_000948_200--Hb_003020_210 Hb_000948_200--Hb_083380_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67837 0 65.5425 89.8382 11.7113 36.0197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.3709 102.658 20.9247 7.24142 0

CAGE analysis