Hb_110390_010

Information

Type -
Description -
Location Contig110390: 385-1512
Sequence    

Annotation

kegg
ID rcu:RCOM_0507600
description DNA cross-link repair protein pso2/snm1, putative
nr
ID KDP28043.1
description hypothetical protein JCGZ_19741 [Jatropha curcas]
swissprot
ID Q5QJC3
description 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1
trembl
ID A0A067JYZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19741 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110390_010 0.0 - - hypothetical protein JCGZ_19741 [Jatropha curcas]
2 Hb_000329_270 0.1517557143 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
3 Hb_001842_050 0.1724879428 - - PREDICTED: protein BUD31 homolog 1-like [Jatropha curcas]
4 Hb_000803_200 0.1793459947 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
5 Hb_002863_030 0.1825020333 - - unknown [Populus trichocarpa x Populus deltoides]
6 Hb_004884_160 0.1827525818 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
7 Hb_000084_260 0.1859657802 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
8 Hb_048476_100 0.1871250581 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]
9 Hb_002374_080 0.2005330413 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
10 Hb_000027_040 0.2008480446 - - PREDICTED: uncharacterized protein LOC105636980 [Jatropha curcas]
11 Hb_000227_190 0.2016267837 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
12 Hb_002681_200 0.2024753656 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
13 Hb_007113_070 0.2073272941 - - protein with unknown function [Ricinus communis]
14 Hb_009486_020 0.2075540121 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
15 Hb_000184_210 0.2081135107 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
16 Hb_148121_040 0.2085428506 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
17 Hb_055062_020 0.2110508583 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
18 Hb_000258_250 0.21180149 - - Origin recognition complex subunit, putative [Ricinus communis]
19 Hb_006671_010 0.2122213085 - - PREDICTED: 5' exonuclease Apollo isoform X1 [Jatropha curcas]
20 Hb_001511_260 0.2125131324 - - tryptophan biosynthesis protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_110390_010 Hb_110390_010 Hb_000329_270 Hb_000329_270 Hb_110390_010--Hb_000329_270 Hb_001842_050 Hb_001842_050 Hb_110390_010--Hb_001842_050 Hb_000803_200 Hb_000803_200 Hb_110390_010--Hb_000803_200 Hb_002863_030 Hb_002863_030 Hb_110390_010--Hb_002863_030 Hb_004884_160 Hb_004884_160 Hb_110390_010--Hb_004884_160 Hb_000084_260 Hb_000084_260 Hb_110390_010--Hb_000084_260 Hb_048476_100 Hb_048476_100 Hb_000329_270--Hb_048476_100 Hb_003849_130 Hb_003849_130 Hb_000329_270--Hb_003849_130 Hb_055062_020 Hb_055062_020 Hb_000329_270--Hb_055062_020 Hb_000027_040 Hb_000027_040 Hb_000329_270--Hb_000027_040 Hb_000258_250 Hb_000258_250 Hb_000329_270--Hb_000258_250 Hb_000329_270--Hb_000803_200 Hb_004162_210 Hb_004162_210 Hb_001842_050--Hb_004162_210 Hb_000352_290 Hb_000352_290 Hb_001842_050--Hb_000352_290 Hb_001842_050--Hb_000084_260 Hb_006915_040 Hb_006915_040 Hb_001842_050--Hb_006915_040 Hb_130235_010 Hb_130235_010 Hb_001842_050--Hb_130235_010 Hb_001842_050--Hb_000329_270 Hb_000849_130 Hb_000849_130 Hb_000803_200--Hb_000849_130 Hb_006326_040 Hb_006326_040 Hb_000803_200--Hb_006326_040 Hb_000803_200--Hb_055062_020 Hb_001511_260 Hb_001511_260 Hb_000803_200--Hb_001511_260 Hb_007113_070 Hb_007113_070 Hb_000803_200--Hb_007113_070 Hb_000045_310 Hb_000045_310 Hb_000803_200--Hb_000045_310 Hb_002681_200 Hb_002681_200 Hb_002863_030--Hb_002681_200 Hb_000608_050 Hb_000608_050 Hb_002863_030--Hb_000608_050 Hb_002863_030--Hb_000803_200 Hb_002863_030--Hb_000849_130 Hb_002301_160 Hb_002301_160 Hb_002863_030--Hb_002301_160 Hb_000392_340 Hb_000392_340 Hb_002863_030--Hb_000392_340 Hb_000403_060 Hb_000403_060 Hb_004884_160--Hb_000403_060 Hb_004884_160--Hb_055062_020 Hb_148121_040 Hb_148121_040 Hb_004884_160--Hb_148121_040 Hb_004884_160--Hb_007113_070 Hb_000175_340 Hb_000175_340 Hb_004884_160--Hb_000175_340 Hb_032264_110 Hb_032264_110 Hb_004884_160--Hb_032264_110 Hb_003018_050 Hb_003018_050 Hb_000084_260--Hb_003018_050 Hb_004125_110 Hb_004125_110 Hb_000084_260--Hb_004125_110 Hb_000107_300 Hb_000107_300 Hb_000084_260--Hb_000107_300 Hb_003376_190 Hb_003376_190 Hb_000084_260--Hb_003376_190 Hb_000084_260--Hb_007113_070 Hb_009486_020 Hb_009486_020 Hb_000084_260--Hb_009486_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197362 0.200742 1.49313 1.88527 0.424395 0.881103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50023 1.86789 1.96619 0.575877 0

CAGE analysis