Hb_000108_100

Information

Type -
Description -
Location Contig108: 101462-103601
Sequence    

Annotation

kegg
ID rcu:RCOM_0119080
description DNA polymerase epsilon subunit B, putative (EC:2.7.7.7)
nr
ID XP_012078485.1
description PREDICTED: DNA polymerase epsilon subunit 2 isoform X2 [Jatropha curcas]
swissprot
ID P0CN24
description DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DPB2 PE=3 SV=1
trembl
ID A0A067K917
description DNA polymerase epsilon subunit 2 OS=Jatropha curcas GN=JCGZ_13167 PE=3 SV=1
Gene Ontology
ID GO:0008622
description dna polymerase epsilon subunit 2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02388: 102388-118752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_100 0.0 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X2 [Jatropha curcas]
2 Hb_000326_070 0.2312973283 - - phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis]
3 Hb_000442_090 0.2425593703 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
4 Hb_019516_020 0.255943373 - - conserved hypothetical protein [Ricinus communis]
5 Hb_116420_030 0.2565632493 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
6 Hb_009393_190 0.2624309867 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
7 Hb_000092_130 0.264704806 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
8 Hb_000959_310 0.2657623725 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
9 Hb_000099_230 0.2658361771 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
10 Hb_004374_180 0.266120747 - - GMP synthase, putative [Ricinus communis]
11 Hb_001017_080 0.2664114392 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
12 Hb_000010_210 0.267444768 - - PREDICTED: centromere protein X [Jatropha curcas]
13 Hb_012120_030 0.2683920915 - - -
14 Hb_002232_130 0.2688142373 - - -
15 Hb_114336_030 0.2695891958 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
16 Hb_002900_160 0.2707057955 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
17 Hb_000331_290 0.2711116459 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005545_030 0.2712698136 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
19 Hb_001019_080 0.271925008 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
20 Hb_000574_280 0.2720880102 - - hypothetical protein POPTR_0006s28780g [Populus trichocarpa]

Gene co-expression network

sample Hb_000108_100 Hb_000108_100 Hb_000326_070 Hb_000326_070 Hb_000108_100--Hb_000326_070 Hb_000442_090 Hb_000442_090 Hb_000108_100--Hb_000442_090 Hb_019516_020 Hb_019516_020 Hb_000108_100--Hb_019516_020 Hb_116420_030 Hb_116420_030 Hb_000108_100--Hb_116420_030 Hb_009393_190 Hb_009393_190 Hb_000108_100--Hb_009393_190 Hb_000092_130 Hb_000092_130 Hb_000108_100--Hb_000092_130 Hb_025236_040 Hb_025236_040 Hb_000326_070--Hb_025236_040 Hb_002374_170 Hb_002374_170 Hb_000326_070--Hb_002374_170 Hb_004297_070 Hb_004297_070 Hb_000326_070--Hb_004297_070 Hb_001951_260 Hb_001951_260 Hb_000326_070--Hb_001951_260 Hb_064264_010 Hb_064264_010 Hb_000326_070--Hb_064264_010 Hb_175215_010 Hb_175215_010 Hb_000326_070--Hb_175215_010 Hb_000010_210 Hb_000010_210 Hb_000442_090--Hb_000010_210 Hb_001019_080 Hb_001019_080 Hb_000442_090--Hb_001019_080 Hb_000442_090--Hb_004297_070 Hb_000442_090--Hb_000326_070 Hb_000101_270 Hb_000101_270 Hb_000442_090--Hb_000101_270 Hb_000442_090--Hb_064264_010 Hb_027760_010 Hb_027760_010 Hb_019516_020--Hb_027760_010 Hb_029510_020 Hb_029510_020 Hb_019516_020--Hb_029510_020 Hb_002045_040 Hb_002045_040 Hb_019516_020--Hb_002045_040 Hb_001221_320 Hb_001221_320 Hb_019516_020--Hb_001221_320 Hb_000331_290 Hb_000331_290 Hb_019516_020--Hb_000331_290 Hb_019516_020--Hb_002374_170 Hb_000465_040 Hb_000465_040 Hb_116420_030--Hb_000465_040 Hb_001279_070 Hb_001279_070 Hb_116420_030--Hb_001279_070 Hb_000723_090 Hb_000723_090 Hb_116420_030--Hb_000723_090 Hb_000484_020 Hb_000484_020 Hb_116420_030--Hb_000484_020 Hb_007432_080 Hb_007432_080 Hb_116420_030--Hb_007432_080 Hb_070986_010 Hb_070986_010 Hb_116420_030--Hb_070986_010 Hb_000157_080 Hb_000157_080 Hb_009393_190--Hb_000157_080 Hb_009615_020 Hb_009615_020 Hb_009393_190--Hb_009615_020 Hb_000574_280 Hb_000574_280 Hb_009393_190--Hb_000574_280 Hb_100743_010 Hb_100743_010 Hb_009393_190--Hb_100743_010 Hb_001437_090 Hb_001437_090 Hb_009393_190--Hb_001437_090 Hb_000959_310 Hb_000959_310 Hb_009393_190--Hb_000959_310 Hb_000046_490 Hb_000046_490 Hb_000092_130--Hb_000046_490 Hb_011316_100 Hb_011316_100 Hb_000092_130--Hb_011316_100 Hb_003544_020 Hb_003544_020 Hb_000092_130--Hb_003544_020 Hb_002301_290 Hb_002301_290 Hb_000092_130--Hb_002301_290 Hb_002183_070 Hb_002183_070 Hb_000092_130--Hb_002183_070 Hb_002081_070 Hb_002081_070 Hb_000092_130--Hb_002081_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.28806 0 0.146709 0.196297 0.193392 0.08577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.335346 0.351354 0 0.108536 0

CAGE analysis