Hb_000442_090

Information

Type -
Description -
Location Contig442: 113399-113850
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07450g
description POPTRDRAFT_564090; poly(A)-binding protein C-terminal interacting protein 6
nr
ID XP_012091211.1
description PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JD11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03372 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42700: 113311-114026
cDNA
(Sanger)
(ID:Location)		 007_M06.ab1: 113454-114025 , 026_L13.ab1: 113311-114027 , 030_H10.ab1: 113410-114026 , 032_I06.ab1: 113454-114025 , 034_K20.ab1: 113410-114026 , 045_O04.ab1: 113410-114026

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_090 0.0 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
2 Hb_000010_210 0.1301262401 - - PREDICTED: centromere protein X [Jatropha curcas]
3 Hb_001019_080 0.1405690768 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
4 Hb_004297_070 0.1450781748 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
5 Hb_000326_070 0.1465177317 - - phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis]
6 Hb_000101_270 0.1495165956 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
7 Hb_064264_010 0.1614088558 - - hypothetical protein [Zea mays]
8 Hb_070986_010 0.1625146718 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
9 Hb_011931_050 0.1645317229 - - fk506-binding protein, putative [Ricinus communis]
10 Hb_003018_120 0.1680319336 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
11 Hb_003607_170 0.1680571077 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
12 Hb_003640_060 0.168724444 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_000160_130 0.1711743019 - - PREDICTED: uncharacterized protein LOC105648215 [Jatropha curcas]
14 Hb_000840_190 0.1715532428 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
15 Hb_001377_150 0.1755836259 - - hypothetical protein JCGZ_14266 [Jatropha curcas]
16 Hb_010883_150 0.1768572487 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
17 Hb_181288_010 0.1794040667 - - rac-GTP binding protein, putative [Ricinus communis]
18 Hb_000565_030 0.1798699103 - - PREDICTED: 40S ribosomal protein S26-3-like [Jatropha curcas]
19 Hb_003878_010 0.1802935658 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
20 Hb_007875_030 0.1804439787 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]

Gene co-expression network

sample Hb_000442_090 Hb_000442_090 Hb_000010_210 Hb_000010_210 Hb_000442_090--Hb_000010_210 Hb_001019_080 Hb_001019_080 Hb_000442_090--Hb_001019_080 Hb_004297_070 Hb_004297_070 Hb_000442_090--Hb_004297_070 Hb_000326_070 Hb_000326_070 Hb_000442_090--Hb_000326_070 Hb_000101_270 Hb_000101_270 Hb_000442_090--Hb_000101_270 Hb_064264_010 Hb_064264_010 Hb_000442_090--Hb_064264_010 Hb_000010_210--Hb_001019_080 Hb_007432_080 Hb_007432_080 Hb_000010_210--Hb_007432_080 Hb_002289_120 Hb_002289_120 Hb_000010_210--Hb_002289_120 Hb_000186_190 Hb_000186_190 Hb_000010_210--Hb_000186_190 Hb_086703_010 Hb_086703_010 Hb_000010_210--Hb_086703_010 Hb_003878_010 Hb_003878_010 Hb_000010_210--Hb_003878_010 Hb_001814_070 Hb_001814_070 Hb_001019_080--Hb_001814_070 Hb_001019_080--Hb_002289_120 Hb_000840_190 Hb_000840_190 Hb_001019_080--Hb_000840_190 Hb_001019_080--Hb_007432_080 Hb_007875_030 Hb_007875_030 Hb_001019_080--Hb_007875_030 Hb_001377_150 Hb_001377_150 Hb_004297_070--Hb_001377_150 Hb_001278_110 Hb_001278_110 Hb_004297_070--Hb_001278_110 Hb_181288_010 Hb_181288_010 Hb_004297_070--Hb_181288_010 Hb_003266_050 Hb_003266_050 Hb_004297_070--Hb_003266_050 Hb_070986_010 Hb_070986_010 Hb_004297_070--Hb_070986_010 Hb_003874_020 Hb_003874_020 Hb_004297_070--Hb_003874_020 Hb_025236_040 Hb_025236_040 Hb_000326_070--Hb_025236_040 Hb_002374_170 Hb_002374_170 Hb_000326_070--Hb_002374_170 Hb_000326_070--Hb_004297_070 Hb_001951_260 Hb_001951_260 Hb_000326_070--Hb_001951_260 Hb_000326_070--Hb_064264_010 Hb_175215_010 Hb_175215_010 Hb_000326_070--Hb_175215_010 Hb_003939_080 Hb_003939_080 Hb_000101_270--Hb_003939_080 Hb_001946_210 Hb_001946_210 Hb_000101_270--Hb_001946_210 Hb_002868_010 Hb_002868_010 Hb_000101_270--Hb_002868_010 Hb_000101_270--Hb_064264_010 Hb_000101_270--Hb_070986_010 Hb_000000_160 Hb_000000_160 Hb_000101_270--Hb_000000_160 Hb_046049_010 Hb_046049_010 Hb_064264_010--Hb_046049_010 Hb_042083_050 Hb_042083_050 Hb_064264_010--Hb_042083_050 Hb_064264_010--Hb_002868_010 Hb_064264_010--Hb_001946_210 Hb_064264_010--Hb_175215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
262.582 76.6098 90.5692 110.5 87.3326 184.43
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
371.547 362.748 32.2159 133.5 4.76808

CAGE analysis