Hb_019516_020

Information

Type -
Description -
Location Contig19516: 13352-14334
Sequence    

Annotation

kegg
ID rcu:RCOM_0632600
description hypothetical protein
nr
ID XP_002519679.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S110
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0632600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19524: 13508-13637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019516_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_027760_010 0.1260234604 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
3 Hb_029510_020 0.1433871428 - - hypothetical protein JCGZ_06306 [Jatropha curcas]
4 Hb_002045_040 0.1570754114 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_001221_320 0.1585229582 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
6 Hb_000331_290 0.1596263962 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002374_170 0.1596610728 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
8 Hb_001504_050 0.1647405632 - - hypothetical protein POPTR_0001s14840g [Populus trichocarpa]
9 Hb_000630_060 0.1655749748 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
10 Hb_000720_160 0.1656044029 - - PREDICTED: C2 domain-containing protein At1g63220 [Jatropha curcas]
11 Hb_092115_010 0.1657789536 - - -
12 Hb_000123_230 0.1665792171 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003544_020 0.1670554346 - - PREDICTED: elongin-A [Jatropha curcas]
14 Hb_002232_130 0.1671026476 - - -
15 Hb_000670_020 0.1673994942 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
16 Hb_116420_030 0.1703312923 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
17 Hb_006816_220 0.1714405522 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
18 Hb_000933_050 0.1732922921 - - protein binding protein, putative [Ricinus communis]
19 Hb_002081_070 0.1738798893 - - PREDICTED: pyridoxal kinase [Jatropha curcas]
20 Hb_003185_110 0.1741792643 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]

Gene co-expression network

sample Hb_019516_020 Hb_019516_020 Hb_027760_010 Hb_027760_010 Hb_019516_020--Hb_027760_010 Hb_029510_020 Hb_029510_020 Hb_019516_020--Hb_029510_020 Hb_002045_040 Hb_002045_040 Hb_019516_020--Hb_002045_040 Hb_001221_320 Hb_001221_320 Hb_019516_020--Hb_001221_320 Hb_000331_290 Hb_000331_290 Hb_019516_020--Hb_000331_290 Hb_002374_170 Hb_002374_170 Hb_019516_020--Hb_002374_170 Hb_028347_010 Hb_028347_010 Hb_027760_010--Hb_028347_010 Hb_000630_060 Hb_000630_060 Hb_027760_010--Hb_000630_060 Hb_027760_010--Hb_002045_040 Hb_000714_030 Hb_000714_030 Hb_027760_010--Hb_000714_030 Hb_000123_230 Hb_000123_230 Hb_027760_010--Hb_000123_230 Hb_003185_110 Hb_003185_110 Hb_029510_020--Hb_003185_110 Hb_002783_270 Hb_002783_270 Hb_029510_020--Hb_002783_270 Hb_005773_060 Hb_005773_060 Hb_029510_020--Hb_005773_060 Hb_004934_030 Hb_004934_030 Hb_029510_020--Hb_004934_030 Hb_001476_070 Hb_001476_070 Hb_029510_020--Hb_001476_070 Hb_002900_160 Hb_002900_160 Hb_029510_020--Hb_002900_160 Hb_011381_060 Hb_011381_060 Hb_002045_040--Hb_011381_060 Hb_000805_120 Hb_000805_120 Hb_002045_040--Hb_000805_120 Hb_145880_030 Hb_145880_030 Hb_002045_040--Hb_145880_030 Hb_000251_070 Hb_000251_070 Hb_002045_040--Hb_000251_070 Hb_010407_040 Hb_010407_040 Hb_002045_040--Hb_010407_040 Hb_002045_040--Hb_002374_170 Hb_003544_020 Hb_003544_020 Hb_001221_320--Hb_003544_020 Hb_002349_040 Hb_002349_040 Hb_001221_320--Hb_002349_040 Hb_002811_260 Hb_002811_260 Hb_001221_320--Hb_002811_260 Hb_001221_320--Hb_005773_060 Hb_008686_080 Hb_008686_080 Hb_001221_320--Hb_008686_080 Hb_001454_400 Hb_001454_400 Hb_001221_320--Hb_001454_400 Hb_000331_290--Hb_002349_040 Hb_006096_040 Hb_006096_040 Hb_000331_290--Hb_006096_040 Hb_006634_040 Hb_006634_040 Hb_000331_290--Hb_006634_040 Hb_001484_060 Hb_001484_060 Hb_000331_290--Hb_001484_060 Hb_001124_120 Hb_001124_120 Hb_000331_290--Hb_001124_120 Hb_007086_010 Hb_007086_010 Hb_000331_290--Hb_007086_010 Hb_002374_170--Hb_011381_060 Hb_001459_080 Hb_001459_080 Hb_002374_170--Hb_001459_080 Hb_004787_060 Hb_004787_060 Hb_002374_170--Hb_004787_060 Hb_168878_010 Hb_168878_010 Hb_002374_170--Hb_168878_010 Hb_002374_170--Hb_002811_260 Hb_028841_030 Hb_028841_030 Hb_002374_170--Hb_028841_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2582 0.293423 1.64654 1.14929 2.6057 0.617416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.02765 2.58986 0.619394 0.428555 0.274421

CAGE analysis