Hb_028347_010

Information

Type -
Description -
Location Contig28347: 12089-13481
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028347_010 0.0 - - -
2 Hb_027760_010 0.0892855471 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
3 Hb_000684_090 0.0990624847 transcription factor TF Family: S1Fa-like -
4 Hb_011381_060 0.1035970573 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
5 Hb_001951_140 0.1058748375 - - PREDICTED: uncharacterized protein LOC105649757 isoform X1 [Jatropha curcas]
6 Hb_000887_020 0.1090720734 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
7 Hb_002045_040 0.1113682958 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_000714_030 0.1132015903 - - Nucleosome assembly [Gossypium arboreum]
9 Hb_000798_030 0.114620273 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
10 Hb_000630_060 0.1159792944 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
11 Hb_000438_170 0.1200425797 - - -
12 Hb_004204_120 0.1227702982 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
13 Hb_002296_060 0.1238392319 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
14 Hb_003058_070 0.1241207105 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
15 Hb_000154_080 0.1248809784 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
16 Hb_145880_030 0.1249605002 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
17 Hb_139518_030 0.1258124719 - - protein kinase atn1, putative [Ricinus communis]
18 Hb_007154_020 0.1267154943 - - -
19 Hb_003185_080 0.126845033 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
20 Hb_001538_120 0.1270172119 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]

Gene co-expression network

sample Hb_028347_010 Hb_028347_010 Hb_027760_010 Hb_027760_010 Hb_028347_010--Hb_027760_010 Hb_000684_090 Hb_000684_090 Hb_028347_010--Hb_000684_090 Hb_011381_060 Hb_011381_060 Hb_028347_010--Hb_011381_060 Hb_001951_140 Hb_001951_140 Hb_028347_010--Hb_001951_140 Hb_000887_020 Hb_000887_020 Hb_028347_010--Hb_000887_020 Hb_002045_040 Hb_002045_040 Hb_028347_010--Hb_002045_040 Hb_000630_060 Hb_000630_060 Hb_027760_010--Hb_000630_060 Hb_027760_010--Hb_002045_040 Hb_000714_030 Hb_000714_030 Hb_027760_010--Hb_000714_030 Hb_000123_230 Hb_000123_230 Hb_027760_010--Hb_000123_230 Hb_019516_020 Hb_019516_020 Hb_027760_010--Hb_019516_020 Hb_001828_090 Hb_001828_090 Hb_000684_090--Hb_001828_090 Hb_000270_270 Hb_000270_270 Hb_000684_090--Hb_000270_270 Hb_001512_070 Hb_001512_070 Hb_000684_090--Hb_001512_070 Hb_007101_150 Hb_007101_150 Hb_000684_090--Hb_007101_150 Hb_000015_080 Hb_000015_080 Hb_000684_090--Hb_000015_080 Hb_011360_140 Hb_011360_140 Hb_000684_090--Hb_011360_140 Hb_007154_020 Hb_007154_020 Hb_011381_060--Hb_007154_020 Hb_145880_030 Hb_145880_030 Hb_011381_060--Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_011381_060--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_011381_060--Hb_002374_170 Hb_011381_060--Hb_002045_040 Hb_028841_030 Hb_028841_030 Hb_011381_060--Hb_028841_030 Hb_001246_060 Hb_001246_060 Hb_001951_140--Hb_001246_060 Hb_002685_190 Hb_002685_190 Hb_001951_140--Hb_002685_190 Hb_000154_080 Hb_000154_080 Hb_001951_140--Hb_000154_080 Hb_002686_020 Hb_002686_020 Hb_001951_140--Hb_002686_020 Hb_004645_050 Hb_004645_050 Hb_001951_140--Hb_004645_050 Hb_001951_140--Hb_000714_030 Hb_024682_010 Hb_024682_010 Hb_000887_020--Hb_024682_010 Hb_003607_050 Hb_003607_050 Hb_000887_020--Hb_003607_050 Hb_000251_070 Hb_000251_070 Hb_000887_020--Hb_000251_070 Hb_004934_110 Hb_004934_110 Hb_000887_020--Hb_004934_110 Hb_004204_120 Hb_004204_120 Hb_000887_020--Hb_004204_120 Hb_003125_190 Hb_003125_190 Hb_000887_020--Hb_003125_190 Hb_000805_120 Hb_000805_120 Hb_002045_040--Hb_000805_120 Hb_002045_040--Hb_145880_030 Hb_002045_040--Hb_000251_070 Hb_002045_040--Hb_010407_040 Hb_002045_040--Hb_002374_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.16821 1.20804 1.73063 0.612496 3.23891 2.16869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.96365 4.74678 1.60656 0.512868 0.881108

CAGE analysis